Aloxe3 (arachidonate lipoxygenase 3) - Rat Genome Database

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Gene: Aloxe3 (arachidonate lipoxygenase 3) Heterocephalus glaber
Analyze
Symbol: Aloxe3
Name: arachidonate lipoxygenase 3
RGD ID: 18932242
Description: ENCODES a protein that exhibits hepoxilin A3 synthase activity (ortholog); intramolecular hydroxytransferase activity (ortholog); oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (ortholog); INVOLVED IN arachidonic acid metabolic process (ortholog); bicellular tight junction assembly (ortholog); ceramide biosynthetic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive congenital ichthyosis (ortholog); autosomal recessive congenital ichthyosis 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hydroperoxide isomerase ALOXE3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,666,423 - 10,688,376 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,666,255 - 10,689,204 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Aloxe3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,666,423 - 10,688,376 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,666,255 - 10,689,204 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ALOXE3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38178,095,900 - 8,118,916 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl178,095,900 - 8,119,047 (-)EnsemblGRCh38hg38GRCh38
GRCh37177,999,218 - 8,022,234 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,939,943 - 7,962,532 (-)NCBINCBI36Build 36hg18NCBI36
Build 34177,939,942 - 7,962,532NCBI
Celera178,026,859 - 8,049,862 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,894,132 - 7,917,136 (-)NCBIHuRef
CHM1_1178,007,971 - 8,030,756 (-)NCBICHM1_1
T2T-CHM13v2.0178,001,351 - 8,024,291 (-)NCBIT2T-CHM13v2.0
Aloxe3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,016,243 - 69,039,941 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,016,722 - 69,039,941 (+)EnsemblGRCm39 Ensembl
GRCm381169,125,417 - 69,149,115 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,125,896 - 69,149,115 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,939,879 - 68,962,617 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,942,572 - 68,965,309 (+)NCBIMGSCv36mm8
Celera1176,069,912 - 76,093,792 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.38NCBI
Aloxe3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,329,224 - 54,353,167 (+)NCBIGRCr8
mRatBN7.21053,830,219 - 53,854,328 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1053,831,264 - 53,854,328 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,493,053 - 58,516,028 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01057,981,652 - 58,004,629 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,489,816 - 53,512,793 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01055,711,996 - 55,735,915 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,712,043 - 55,735,911 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,455,058 - 55,478,971 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41055,885,573 - 55,908,641 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11055,905,197 - 55,921,901 (+)NCBI
Celera1052,996,789 - 53,019,740 (+)NCBICelera
Cytogenetic Map10q24NCBI
Aloxe3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554678,844,805 - 8,869,964 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554678,844,805 - 8,869,230 (+)NCBIChiLan1.0ChiLan1.0
ALOXE3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21965,634,922 - 65,657,226 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11770,444,321 - 70,466,618 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01743,539,657 - 43,562,433 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11748,271,226 - 48,293,941 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1748,271,226 - 48,293,941 (+)Ensemblpanpan1.1panPan2
ALOXE3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,917,681 - 32,941,470 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,918,065 - 32,941,752 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha533,053,928 - 33,077,702 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0533,020,545 - 33,044,337 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl533,020,929 - 33,044,340 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,987,512 - 33,011,269 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,943,286 - 32,967,078 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0533,123,298 - 33,147,098 (-)NCBIUU_Cfam_GSD_1.0
Aloxe3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,855,295 - 47,876,774 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,329,435 - 1,350,923 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,329,492 - 1,350,914 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALOXE3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,309,848 - 53,331,523 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,309,845 - 53,331,780 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,768,185 - 55,801,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALOXE3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,478,775 - 7,500,931 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,478,793 - 7,500,428 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605913,904,095 - 13,926,227 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015739   ⟹   ENSHGLP00000015575
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478610,666,423 - 10,688,376 (-)Ensembl
RefSeq Acc Id: XM_004857474   ⟹   XP_004857531
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478610,666,255 - 10,689,204 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857531 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015575
Reference Protein Sequences
RefSeq Acc Id: XP_004857531   ⟸   XM_004857474
RefSeq Acc Id: ENSHGLP00000015575   ⟸   ENSHGLT00000015739


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011148 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015739 ENTREZGENE
NCBI Gene Aloxe3 ENTREZGENE