Tal1 (TAL bHLH transcription factor 1, erythroid differentiation factor) - Rat Genome Database

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Gene: Tal1 (TAL bHLH transcription factor 1, erythroid differentiation factor) Heterocephalus glaber
Analyze
Symbol: Tal1
Name: TAL bHLH transcription factor 1, erythroid differentiation factor
RGD ID: 18930685
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN angiogenesis (ortholog); astrocyte fate commitment (ortholog); basophil differentiation (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); lymphoid leukemia (ortholog); T-cell acute lymphoblastic leukemia (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-cell acute lymphocytic leukemia protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248595,586,977 - 5,601,460 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248595,586,489 - 5,601,225 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248595,586,977 - 5,601,460 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248595,586,489 - 5,601,225 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38147,216,290 - 47,232,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl147,216,290 - 47,232,225 (-)EnsemblGRCh38hg38GRCh38
GRCh37147,681,962 - 47,698,007 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36147,454,551 - 47,468,030 (-)NCBINCBI36Build 36hg18NCBI36
Build 34147,393,983 - 47,407,463NCBI
Celera145,968,230 - 45,981,708 (-)NCBICelera
Cytogenetic Map1p33NCBI
HuRef145,798,600 - 45,812,074 (-)NCBIHuRef
CHM1_1147,798,845 - 47,812,319 (-)NCBICHM1_1
T2T-CHM13v2.0147,094,699 - 47,110,742 (-)NCBIT2T-CHM13v2.0
Tal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394114,913,623 - 114,928,952 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4114,913,623 - 114,928,952 (+)EnsemblGRCm39 Ensembl
GRCm384115,056,426 - 115,071,755 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4115,056,426 - 115,071,755 (+)EnsemblGRCm38mm10GRCm38
MGSCv374114,732,132 - 114,744,360 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364114,557,459 - 114,569,687 (+)NCBIMGSCv36mm8
Celera4113,806,727 - 113,818,916 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map452.73NCBI
Tal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,823,093 - 133,837,737 (+)NCBIGRCr8
mRatBN7.25128,586,776 - 128,600,976 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5128,587,701 - 128,600,976 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5131,270,143 - 131,283,468 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05132,999,788 - 133,013,121 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,021,481 - 133,034,804 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05133,864,401 - 133,878,604 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,864,798 - 133,878,830 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05137,655,978 - 137,670,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45135,430,985 - 135,444,692 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15135,438,330 - 135,447,104 (+)NCBI
Celera5127,232,703 - 127,245,971 (+)NCBICelera
Cytogenetic Map5q35NCBI
Tal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,310,628 - 11,315,924 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546411,304,611 - 11,317,420 (+)NCBIChiLan1.0ChiLan1.0
TAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21179,570,869 - 179,586,982 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11178,712,653 - 178,728,777 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0146,524,484 - 46,540,595 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1148,039,155 - 48,054,021 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl148,042,594 - 48,048,622 (-)Ensemblpanpan1.1panPan2
TAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11513,446,752 - 13,462,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1513,449,481 - 13,462,047 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1513,598,407 - 13,614,022 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01513,595,386 - 13,611,008 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1513,598,590 - 13,611,010 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11513,395,087 - 13,410,685 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01513,463,077 - 13,478,696 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01513,532,579 - 13,548,206 (+)NCBIUU_Cfam_GSD_1.0
Tal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505862,223,080 - 62,238,124 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647428,047,808 - 28,056,065 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647428,049,326 - 28,061,495 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6164,283,366 - 164,295,290 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16164,282,242 - 164,297,636 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26151,830,187 - 151,846,169 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12085,681,247 - 85,697,887 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2085,688,155 - 85,694,829 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603331,381,681 - 31,398,704 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002204   ⟹   ENSHGLP00000002156
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248595,586,977 - 5,601,460 (+)Ensembl
RefSeq Acc Id: XM_004869307   ⟹   XP_004869364
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,587,206 - 5,601,225 (+)NCBI
RefSeq Acc Id: XM_004869308   ⟹   XP_004869365
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,587,206 - 5,601,225 (+)NCBI
RefSeq Acc Id: XM_004869309   ⟹   XP_004869366
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,587,206 - 5,601,225 (+)NCBI
RefSeq Acc Id: XM_004869311   ⟹   XP_004869368
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,586,489 - 5,601,225 (+)NCBI
RefSeq Acc Id: XM_021247964   ⟹   XP_021103623
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248595,592,230 - 5,601,225 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869364 (Get FASTA)   NCBI Sequence Viewer  
  XP_004869365 (Get FASTA)   NCBI Sequence Viewer  
  XP_004869366 (Get FASTA)   NCBI Sequence Viewer  
  XP_004869368 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103623 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002156
Reference Protein Sequences
RefSeq Acc Id: XP_004869368   ⟸   XM_004869311
RefSeq Acc Id: XP_004869364   ⟸   XM_004869307
RefSeq Acc Id: XP_004869365   ⟸   XM_004869308
RefSeq Acc Id: XP_004869366   ⟸   XM_004869309
RefSeq Acc Id: XP_021103623   ⟸   XM_021247964
RefSeq Acc Id: ENSHGLP00000002156   ⟸   ENSHGLT00000002204


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001637 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002204 ENTREZGENE
NCBI Gene Tal1 ENTREZGENE