Resf1 (retroelement silencing factor 1) - Rat Genome Database

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Gene: Resf1 (retroelement silencing factor 1) Heterocephalus glaber
Analyze
Symbol: Resf1
Name: retroelement silencing factor 1
RGD ID: 18930489
Description: ENCODES a protein that exhibits histone methyltransferase binding (inferred); INVOLVED IN negative regulation of single stranded viral RNA replication via double stranded DNA intermediate (ortholog); response to bacterium (ortholog); FOUND IN gamma-tubulin complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kiaa1551; uncharacterized protein KIAA1551 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247784,192,168 - 4,224,027 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Resf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247784,192,168 - 4,224,027 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RESF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,959,415 - 31,993,107 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1231,959,370 - 31,993,107 (+)EnsemblGRCh38hg38GRCh38
GRCh371232,112,349 - 32,146,041 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,003,620 - 32,037,308 (+)NCBINCBI36Build 36hg18NCBI36
Celera1211,934,148 - 11,967,834 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1231,863,530 - 31,897,223 (+)NCBIHuRef
CHM1_11232,078,356 - 32,112,040 (+)NCBICHM1_1
T2T-CHM13v2.01231,835,397 - 31,869,084 (+)NCBIT2T-CHM13v2.0
Resf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,210,907 - 149,237,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6149,210,912 - 149,237,161 (+)EnsemblGRCm39 Ensembl
GRCm386149,309,409 - 149,335,663 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,309,414 - 149,335,663 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,257,936 - 149,284,185 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366149,266,601 - 149,292,826 (+)NCBIMGSCv36mm8
Celera6152,343,904 - 152,370,153 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.89NCBI
Resf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84184,057,165 - 184,093,374 (+)NCBIGRCr8
mRatBN7.24182,325,913 - 182,362,054 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,335,454 - 182,362,054 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.04183,879,177 - 183,905,807 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,896,303 - 183,905,297 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,998,508 - 248,024,196 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,780,191 - 186,789,644 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14187,025,314 - 187,029,613 (+)NCBI
Celera4170,801,085 - 170,827,810 (+)NCBICelera
Cytogenetic Map4q44NCBI
Resf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555053,684,848 - 3,709,624 (-)NCBIChiLan1.0ChiLan1.0
RESF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21064,767,476 - 64,800,905 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11264,763,870 - 64,798,167 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01254,238,276 - 54,272,288 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11256,829,272 - 56,863,360 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1256,829,272 - 56,863,359 (-)Ensemblpanpan1.1panPan2
RESF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12716,829,611 - 16,856,960 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2716,829,968 - 16,839,166 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2729,560,294 - 29,589,056 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02717,009,033 - 17,037,820 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2717,009,052 - 17,037,829 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12716,819,667 - 16,848,433 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02716,852,789 - 16,881,527 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,714,347 - 29,743,126 (+)NCBIUU_Cfam_GSD_1.0
Resf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,414,879 - 77,441,069 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366074,247,824 - 4,274,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RESF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl542,261,304 - 42,299,514 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1542,263,560 - 42,299,596 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2545,546,617 - 45,582,617 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RESF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,402,505 - 31,436,527 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,402,760 - 31,436,533 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660693,503,661 - 3,537,420 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004855030   ⟹   XP_004855087
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247784,192,168 - 4,223,481 (-)NCBI
RefSeq Acc Id: XM_004855031   ⟹   XP_004855088
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247784,192,168 - 4,223,695 (-)NCBI
RefSeq Acc Id: XM_004855032   ⟹   XP_004855089
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247784,192,168 - 4,223,073 (-)NCBI
RefSeq Acc Id: XM_004855035   ⟹   XP_004855092
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247784,192,168 - 4,223,481 (-)NCBI
RefSeq Acc Id: XM_021236550   ⟹   XP_021092209
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247784,192,168 - 4,223,073 (-)NCBI
RefSeq Acc Id: XM_021236551   ⟹   XP_021092210
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247784,192,168 - 4,224,027 (-)NCBI
RefSeq Acc Id: XM_021236552   ⟹   XP_021092211
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247784,192,168 - 4,223,199 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021092210   ⟸   XM_021236551
- Peptide Label: isoform X1
- UniProtKB: G5AUM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855088   ⟸   XM_004855031
- Peptide Label: isoform X1
- UniProtKB: G5AUM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855087   ⟸   XM_004855030
- Peptide Label: isoform X1
- UniProtKB: G5AUM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855092   ⟸   XM_004855035
- Peptide Label: isoform X2
- UniProtKB: G5AUM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092211   ⟸   XM_021236552
- Peptide Label: isoform X1
- UniProtKB: G5AUM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855089   ⟸   XM_004855032
- Peptide Label: isoform X1
- UniProtKB: G5AUM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092209   ⟸   XM_021236550
- Peptide Label: isoform X1
- UniProtKB: G5AUM0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011442 ENTREZGENE
Ensembl Transcript ENSHGLT00000016170 ENTREZGENE
  ENSHGLT00000016171 ENTREZGENE
InterPro RESF1 UniProtKB/TrEMBL
NCBI Gene Resf1 ENTREZGENE
PANTHER RETROELEMENT SILENCING FACTOR 1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DUF4617 UniProtKB/TrEMBL
UniProt G5AUM0 ENTREZGENE, UniProtKB/TrEMBL