Ccr7 (C-C motif chemokine receptor 7) - Rat Genome Database

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Gene: Ccr7 (C-C motif chemokine receptor 7) Heterocephalus glaber
Analyze
Symbol: Ccr7
Name: C-C motif chemokine receptor 7
RGD ID: 18929636
Description: ENCODES a protein that exhibits C-C chemokine receptor activity (inferred); C-C motif chemokine 19 receptor activity (inferred); C-C motif chemokine 21 receptor activity (inferred); INVOLVED IN chemotaxis (ortholog); homeostasis of number of cells (ortholog); immune response (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); aspergillosis (ortholog); asthma (ortholog); FOUND IN cell surface (inferred); external side of plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-C chemokine receptor type 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247952,779,627 - 2,788,897 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247952,777,766 - 2,787,664 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ccr7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247952,779,627 - 2,788,897 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247952,777,766 - 2,787,664 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCR7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381740,553,769 - 40,565,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1740,553,769 - 40,565,472 (-)EnsemblGRCh38hg38GRCh38
GRCh371738,710,021 - 38,721,724 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361735,963,547 - 35,975,250 (-)NCBINCBI36Build 36hg18NCBI36
Build 341735,963,549 - 35,975,250NCBI
Celera1735,371,568 - 35,383,283 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1734,504,331 - 34,516,046 (-)NCBIHuRef
CHM1_11738,945,325 - 38,957,040 (-)NCBICHM1_1
T2T-CHM13v2.01741,418,143 - 41,429,846 (-)NCBIT2T-CHM13v2.0
Ccr7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,035,025 - 99,045,903 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1199,035,022 - 99,045,903 (-)EnsemblGRCm39 Ensembl
GRCm381199,144,199 - 99,155,077 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,144,196 - 99,155,077 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,005,513 - 99,016,391 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,960,289 - 98,971,166 (-)NCBIMGSCv36mm8
Celera11108,811,008 - 108,821,915 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.92NCBI
Ccr7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,594,399 - 84,604,514 (-)NCBIGRCr8
mRatBN7.21084,098,193 - 84,108,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1084,097,381 - 84,108,309 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1089,042,085 - 89,052,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01088,540,204 - 88,550,320 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01083,932,752 - 83,942,875 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01087,057,335 - 87,067,444 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1087,057,136 - 87,067,456 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,852,458 - 86,863,401 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41087,925,093 - 87,936,325 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11087,938,657 - 87,950,682 (-)NCBI
Celera1082,839,231 - 82,849,207 (-)NCBICelera
Cytogenetic Map10q31NCBI
Ccr7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545115,086,119 - 15,095,561 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545115,086,119 - 15,101,862 (-)NCBIChiLan1.0ChiLan1.0
CCR7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21924,385,980 - 24,400,730 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,280,748 - 26,293,297 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01716,720,236 - 16,731,955 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11716,944,641 - 16,956,370 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1716,949,119 - 16,956,370 (+)Ensemblpanpan1.1panPan2
CCR7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,077,976 - 22,092,818 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,068,775 - 22,090,656 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,541,628 - 21,565,735 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0922,861,789 - 22,885,706 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl922,861,889 - 22,883,415 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,636,159 - 21,660,074 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,895,041 - 21,918,952 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0922,019,550 - 22,043,479 (+)NCBIUU_Cfam_GSD_1.0
Ccr7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,495,373 - 21,501,797 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,575,764 - 15,579,757 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,575,764 - 15,579,766 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCR7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,857,286 - 21,872,475 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,857,286 - 21,869,211 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,140,218 - 22,152,166 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap12p13-p11NCBI
CCR7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11665,620,632 - 65,632,394 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1665,620,665 - 65,632,984 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607736,502,507 - 36,514,242 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014144   ⟹   ENSHGLP00000014001
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247952,779,627 - 2,788,897 (+)Ensembl
RefSeq Acc Id: XM_004859431   ⟹   XP_004859488
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247952,777,766 - 2,787,664 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004859488 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014001
GenBank Protein JAN96509 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004859488   ⟸   XM_004859431
- UniProtKB: A0A0N8ESI0 (UniProtKB/TrEMBL),   G5AX74 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000014001   ⟸   ENSHGLT00000014144


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009998 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014144 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro Chemokine_CCR7 UniProtKB/TrEMBL
  Chemokine_rcpt UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
KEGG Report hgl:101719311 UniProtKB/TrEMBL
NCBI Gene Ccr7 ENTREZGENE
PANTHER C-C CHEMOKINE RECEPTOR TYPE 7 UniProtKB/TrEMBL
  CELL ADHESION MOLECULE UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS CCCHEMOKINER UniProtKB/TrEMBL
  CHEMOKINER7 UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0N8ESI0 ENTREZGENE, UniProtKB/TrEMBL
  G5AX74 ENTREZGENE, UniProtKB/TrEMBL