Mrpl52 (mitochondrial ribosomal protein L52) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Mrpl52 (mitochondrial ribosomal protein L52) Heterocephalus glaber
Analyze
Symbol: Mrpl52
Name: mitochondrial ribosomal protein L52
RGD ID: 18929271
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN mitochondrial translation (inferred); translation (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); lysinuric protein intolerance (ortholog); Specific Granule Deficiency (ortholog); FOUND IN mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L52, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,679,541 - 9,683,106 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,679,172 - 9,683,445 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mrpl52
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,679,541 - 9,683,106 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,679,172 - 9,683,445 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MRPL52
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,829,887 - 22,835,037 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,829,879 - 22,835,037 (+)EnsemblGRCh38hg38GRCh38
GRCh371423,299,096 - 23,304,246 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,368,936 - 22,374,086 (+)NCBINCBI36Build 36hg18NCBI36
Celera143,161,975 - 3,167,132 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,416,305 - 3,421,426 (+)NCBIHuRef
CHM1_11423,297,766 - 23,302,922 (+)NCBICHM1_1
T2T-CHM13v2.01417,027,950 - 17,033,103 (+)NCBIT2T-CHM13v2.0
Mrpl52
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,664,366 - 54,667,207 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,664,366 - 54,667,213 (+)EnsemblGRCm39 Ensembl
GRCm381454,426,909 - 54,429,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,426,909 - 54,429,756 (+)EnsemblGRCm38mm10GRCm38
MGSCv371455,045,746 - 55,048,587 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,381,114 - 53,383,955 (+)NCBIMGSCv36mm8
Celera1452,218,914 - 52,221,792 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.78NCBI
Mrpl52
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,852,927 - 31,856,160 (+)NCBIGRCr8
mRatBN7.21527,882,777 - 27,886,131 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1527,882,829 - 27,886,799 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,722,182 - 29,725,407 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01530,869,399 - 30,872,624 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,119,762 - 29,122,985 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,069,479 - 33,072,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,069,382 - 33,072,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01536,955,364 - 36,958,618 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,488,908 - 32,491,857 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,497,380 - 32,507,284 (+)NCBI
Celera1527,465,973 - 27,469,197 (+)NCBICelera
Cytogenetic Map15p13NCBI
Mrpl52
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,452,998 - 37,456,770 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,452,998 - 37,457,014 (-)NCBIChiLan1.0ChiLan1.0
MRPL52
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,259,597 - 24,264,147 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,476,103 - 23,480,635 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,647,387 - 3,651,940 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,746,643 - 21,751,108 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,746,646 - 21,751,108 (+)Ensemblpanpan1.1panPan2
MRPL52
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,177,010 - 3,181,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,177,093 - 3,181,518 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,113,497 - 3,125,472 (+)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_Tasha83,125,605 - 3,130,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,272,386 - 3,289,341 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,284,885 - 3,289,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.182,964,218 - 2,980,813 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,026,006 - 3,042,591 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,287,980 - 3,304,559 (+)NCBIUU_Cfam_GSD_1.0
Mrpl52
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864034,924,695 - 34,929,727 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,459,241 - 1,465,114 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,459,263 - 1,464,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL52
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl776,187,446 - 76,191,901 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1776,187,447 - 76,191,647 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,426,700 - 81,430,910 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL52
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,194,380 - 23,198,960 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605923,223,441 - 23,227,614 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000004708   ⟹   ENSHGLP00000004646
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248209,679,541 - 9,683,106 (-)Ensembl
RefSeq Acc Id: XM_004864199   ⟹   XP_004864256
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248209,679,541 - 9,683,379 (-)NCBI
RefSeq Acc Id: XM_004864200   ⟹   XP_004864257
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248209,679,541 - 9,683,138 (-)NCBI
RefSeq Acc Id: XM_013065269   ⟹   XP_012920723
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248209,679,172 - 9,683,442 (-)NCBI
RefSeq Acc Id: XM_021243909   ⟹   XP_021099568
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248209,679,172 - 9,683,445 (-)NCBI
RefSeq Acc Id: XM_021243910   ⟹   XP_021099569
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248209,679,172 - 9,683,432 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021099568   ⟸   XM_021243909
- Peptide Label: isoform X4
RefSeq Acc Id: XP_012920723   ⟸   XM_013065269
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021099569   ⟸   XM_021243910
- Peptide Label: isoform X5
RefSeq Acc Id: XP_004864256   ⟸   XM_004864199
- Peptide Label: isoform X1
- UniProtKB: G5ASJ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004864257   ⟸   XM_004864200
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JY53 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000004646   ⟸   ENSHGLT00000004708


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003398 Ensembl, ENTREZGENE
  ENSHGLG00000045369 UniProtKB/TrEMBL
  ENSHGLG00100045494 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000004708 ENTREZGENE
  ENSHGLT00000047472 UniProtKB/TrEMBL
  ENSHGLT00100059612 UniProtKB/TrEMBL
InterPro MRPL52 UniProtKB/TrEMBL
KEGG Report hgl:101724403 UniProtKB/TrEMBL
NCBI Gene Mrpl52 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L52, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR34090 UniProtKB/TrEMBL
Pfam MRPL52 UniProtKB/TrEMBL
UniProt A0A0P6JY53 ENTREZGENE, UniProtKB/TrEMBL
  G5ASJ0 ENTREZGENE, UniProtKB/TrEMBL