Zmat3 (zinc finger matrin-type 3) - Rat Genome Database

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Gene: Zmat3 (zinc finger matrin-type 3) Heterocephalus glaber
Analyze
Symbol: Zmat3
Name: zinc finger matrin-type 3
RGD ID: 18928702
Description: ENCODES a protein that exhibits metal ion binding (inferred); nucleic acid binding (inferred); zinc ion binding (inferred); INVOLVED IN positive regulation of apoptotic process (ortholog); ASSOCIATED WITH Currarino syndrome (ortholog); genetic disease (ortholog); Nerve Degeneration (ortholog); FOUND IN nucleoplasm (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Zinc finger matrin-type protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473056,821,546 - 56,849,825 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473056,814,773 - 56,850,697 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Zmat3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473056,821,546 - 56,849,825 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473056,814,773 - 56,850,697 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZMAT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383179,017,223 - 179,072,513 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3178,960,121 - 179,072,215 (-)EnsemblGRCh38hg38GRCh38
GRCh373178,735,011 - 178,790,301 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363180,224,196 - 180,272,278 (-)NCBINCBI36Build 36hg18NCBI36
Celera3177,164,280 - 177,219,033 (-)NCBICelera
Cytogenetic Map3q26.32NCBI
HuRef3176,139,723 - 176,194,425 (-)NCBIHuRef
CHM1_13178,697,897 - 178,752,559 (-)NCBICHM1_1
T2T-CHM13v2.03181,821,051 - 181,876,314 (-)NCBIT2T-CHM13v2.0
Zmat3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39332,388,941 - 32,419,814 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl332,388,941 - 32,420,163 (-)EnsemblGRCm39 Ensembl
GRCm38332,334,792 - 32,365,665 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl332,334,792 - 32,366,014 (-)EnsemblGRCm38mm10GRCm38
MGSCv37332,233,714 - 32,264,587 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36332,526,345 - 32,557,169 (-)NCBIMGSCv36mm8
Celera332,246,614 - 32,279,808 (-)NCBICelera
Cytogenetic Map3A3NCBI
cM Map315.67NCBI
Zmat3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82117,034,517 - 117,066,141 (-)NCBIGRCr8
mRatBN7.22115,106,046 - 115,136,888 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2115,106,966 - 115,136,863 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2121,720,010 - 121,750,776 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02119,832,639 - 119,863,404 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02114,533,608 - 114,564,419 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02118,715,229 - 118,746,109 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2118,721,334 - 118,745,766 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02138,381,017 - 138,411,897 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42118,526,985 - 118,537,727 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12118,471,951 - 118,482,689 (+)NCBI
Celera2110,217,632 - 110,248,380 (-)NCBICelera
Cytogenetic Map2q24NCBI
Zmat3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554208,274,395 - 8,298,224 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554208,270,026 - 8,301,313 (-)NCBIChiLan1.0ChiLan1.0
ZMAT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22176,897,222 - 176,951,103 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13176,901,939 - 176,956,469 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03176,061,012 - 176,115,454 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13184,241,544 - 184,288,639 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3184,128,233 - 184,288,639 (-)Ensemblpanpan1.1panPan2
ZMAT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13412,527,909 - 12,575,409 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3412,535,040 - 12,575,517 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,671,301 - 16,718,806 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03412,424,179 - 12,471,946 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13412,479,474 - 12,527,211 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03412,458,610 - 12,506,860 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03412,698,359 - 12,746,266 (-)NCBIUU_Cfam_GSD_1.0
Zmat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602109,118,097 - 109,154,057 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365664,070,693 - 4,095,868 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365664,066,683 - 4,102,643 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMAT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13117,117,626 - 117,147,604 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113117,113,272 - 117,147,639 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213126,270,158 - 126,280,510 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZMAT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11510,374,093 - 10,434,212 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1510,373,904 - 10,430,759 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606319,255,951 - 19,318,869 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016276   ⟹   ENSHGLP00000016107
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473056,821,546 - 56,849,825 (-)Ensembl
RefSeq Acc Id: XM_004834617   ⟹   XP_004834674
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473056,814,773 - 56,850,623 (-)NCBI
RefSeq Acc Id: XM_004834619   ⟹   XP_004834676
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473056,814,773 - 56,850,622 (-)NCBI
RefSeq Acc Id: XM_021254451   ⟹   XP_021110110
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473056,814,773 - 56,850,697 (-)NCBI
RefSeq Acc Id: XM_021254455   ⟹   XP_021110114
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473056,814,773 - 56,850,298 (-)NCBI
RefSeq Acc Id: XM_021254461   ⟹   XP_021110120
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473056,814,773 - 56,850,299 (-)NCBI
RefSeq Acc Id: XM_021254465   ⟹   XP_021110124
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473056,814,773 - 56,850,425 (-)NCBI
RefSeq Acc Id: XM_021254471   ⟹   XP_021110130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473056,814,773 - 56,850,696 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021110110   ⟸   XM_021254451
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021110130   ⟸   XM_021254471
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004834674   ⟸   XM_004834617
- Peptide Label: isoform X3
- UniProtKB: G5C1G4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004834676   ⟸   XM_004834619
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021110124   ⟸   XM_021254465
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021110120   ⟸   XM_021254461
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021110114   ⟸   XM_021254455
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000016107   ⟸   ENSHGLT00000016276


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011523 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100012235 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016276 ENTREZGENE
  ENSHGLT00000047732 UniProtKB/TrEMBL
  ENSHGLT00100049033 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Matrin/U1-like-C_Znf_C2H2 UniProtKB/TrEMBL
  Znf_C2H2_jaz UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101710711 UniProtKB/TrEMBL
NCBI Gene Zmat3 ENTREZGENE
PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 3 UniProtKB/TrEMBL
  ZINC FINGER MATRIN-TYPE PROTEIN 3 UniProtKB/TrEMBL
Pfam zf-C2H2_jaz UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt G5C1G4 ENTREZGENE, UniProtKB/TrEMBL