Mypop (Myb related transcription factor, partner of profilin) - Rat Genome Database

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Gene: Mypop (Myb related transcription factor, partner of profilin) Heterocephalus glaber
Analyze
Symbol: Mypop
Name: Myb related transcription factor, partner of profilin
RGD ID: 18928534
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myb-related transcription factor, partner of profilin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,317,845 - 7,327,646 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,316,044 - 7,325,720 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (ISO)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mypop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,317,845 - 7,327,646 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,316,044 - 7,325,720 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MYPOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,890,023 - 45,902,613 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,890,023 - 45,902,613 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,393,281 - 46,405,871 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,085,121 - 51,097,702 (-)NCBINCBI36Build 36hg18NCBI36
Celera1943,198,306 - 43,210,886 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,822,075 - 42,834,207 (-)NCBIHuRef
CHM1_11946,395,776 - 46,408,357 (-)NCBICHM1_1
T2T-CHM13v2.01948,717,466 - 48,730,055 (-)NCBIT2T-CHM13v2.0
Mypop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,725,230 - 18,735,691 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,725,170 - 18,735,691 (+)EnsemblGRCm39 Ensembl
GRCm38718,991,240 - 19,001,766 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl718,991,245 - 19,001,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,576,594 - 19,587,115 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,149,839 - 18,160,285 (+)NCBIMGSCv36mm8
Celera716,403,131 - 16,413,671 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.45NCBI
Mypop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,767,747 - 87,778,602 (+)NCBIGRCr8
mRatBN7.2178,639,699 - 78,650,555 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,639,769 - 78,650,552 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,028,700 - 84,039,592 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,586,291 - 92,597,187 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,783,800 - 85,794,692 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,898,492 - 79,909,336 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,898,551 - 79,911,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,159,039 - 81,169,786 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,345,206 - 78,355,988 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera173,105,856 - 73,116,631 (+)NCBICelera
Cytogenetic Map1q21NCBI
Mypop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955574312,744 - 325,288 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955574316,188 - 325,288 (-)NCBIChiLan1.0ChiLan1.0
MYPOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,056,027 - 52,069,747 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,927,411 - 53,940,196 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,899,792 - 42,912,256 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,436,544 - 51,447,385 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,437,143 - 51,447,333 (-)Ensemblpanpan1.1panPan2
MYPOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,727,852 - 109,736,825 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,728,192 - 109,735,402 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,214,046 - 109,222,187 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,264,878 - 110,269,607 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11109,937,476 - 109,945,612 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,572,184 - 109,580,328 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,440,947 - 110,449,088 (+)NCBIUU_Cfam_GSD_1.0
Mypop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,865,862 - 17,877,975 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367062,213,205 - 2,224,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYPOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,203,703 - 52,212,163 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,203,090 - 52,212,202 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,465,792 - 47,474,019 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYPOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,335,878 - 39,348,846 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,336,480 - 39,347,355 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607318,978,069 - 18,990,868 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000024352   ⟹   ENSHGLP00000024133
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248327,317,845 - 7,327,646 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000024353   ⟹   ENSHGLP00000024134
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248327,317,845 - 7,325,147 (+)Ensembl
RefSeq Acc Id: XM_004867124   ⟹   XP_004867181
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248327,316,044 - 7,325,720 (+)NCBI
RefSeq Acc Id: XM_021245872   ⟹   XP_021101531
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248327,316,044 - 7,325,720 (+)NCBI
RefSeq Acc Id: XM_021245873   ⟹   XP_021101532
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248327,316,044 - 7,325,720 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004867181 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101531 (Get FASTA)   NCBI Sequence Viewer  
  XP_021101532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024133
Reference Protein Sequences
RefSeq Acc Id: XP_004867181   ⟸   XM_004867124
RefSeq Acc Id: XP_021101532   ⟸   XM_021245873
RefSeq Acc Id: XP_021101531   ⟸   XM_021245872
RefSeq Acc Id: ENSHGLP00000024133   ⟸   ENSHGLT00000024352
RefSeq Acc Id: ENSHGLP00000024134   ⟸   ENSHGLT00000024353


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017201 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024352 ENTREZGENE
NCBI Gene Mypop ENTREZGENE