LOC101698865 (eotaxin) - Rat Genome Database

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Pathways
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Gene: LOC101698865 (eotaxin) Heterocephalus glaber
Analyze
Symbol: LOC101698865 (Ensembl: CCL11)
Name: eotaxin
RGD ID: 18928292
Description: ENCODES a protein that exhibits CCR3 chemokine receptor binding (inferred); chemokine activity (inferred); cytokine activity (inferred); INVOLVED IN branching involved in mammary gland duct morphogenesis (inferred); chemotaxis (inferred); cytoskeleton organization (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ccl11; chemokine (C-C motif) ligand 11
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248752,168,612 - 2,170,969 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248752,168,621 - 2,170,893 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000001345   ⟹   ENSHGLP00000001303
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248752,168,612 - 2,170,969 (+)Ensembl
RefSeq Acc Id: XM_004870618   ⟹   XP_004870675
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248752,168,621 - 2,170,893 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004870675 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05125 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001303
  ENSHGLP00100021009
GenBank Protein JAN96102 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004870675   ⟸   XM_004870618
- UniProtKB: G5B764 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000001303   ⟸   ENSHGLT00000001345


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001015 Ensembl, ENTREZGENE
  ENSHGLG00100015478 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000001345 ENTREZGENE
  ENSHGLT00100021233 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report hgl:101698865 UniProtKB/TrEMBL
NCBI Gene LOC101698865 ENTREZGENE
PANTHER EOTAXIN UniProtKB/TrEMBL
  PTHR12015 UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt G5B764 ENTREZGENE, UniProtKB/TrEMBL