Foxn4 (forkhead box N4) - Rat Genome Database

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Gene: Foxn4 (forkhead box N4) Heterocephalus glaber
Analyze
Symbol: Foxn4
Name: forkhead box N4
RGD ID: 18927872
Description: ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); neuron fate commitment (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Forkhead box protein N4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474711,123,615 - 11,149,571 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474711,122,463 - 11,149,505 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Foxn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474711,123,615 - 11,149,571 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474711,122,463 - 11,149,505 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FOXN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812109,277,978 - 109,309,284 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12109,277,978 - 109,309,284 (-)EnsemblGRCh38hg38GRCh38
GRCh3712109,715,783 - 109,747,089 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612108,200,167 - 108,231,408 (-)NCBINCBI36Build 36hg18NCBI36
Celera12109,340,232 - 109,371,435 (-)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12106,733,988 - 106,765,245 (-)NCBIHuRef
CHM1_112109,683,689 - 109,714,932 (-)NCBICHM1_1
T2T-CHM13v2.012109,252,960 - 109,284,245 (-)NCBIT2T-CHM13v2.0
Foxn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,392,225 - 114,412,486 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5114,392,225 - 114,411,868 (-)EnsemblGRCm39 Ensembl
GRCm385114,254,164 - 114,274,418 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,254,164 - 114,273,807 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,704,173 - 114,723,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365114,515,163 - 114,534,760 (-)NCBIMGSCv36mm8
Celera5111,360,917 - 111,380,534 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.99NCBI
Foxn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81247,997,308 - 48,020,526 (+)NCBIGRCr8
mRatBN7.21242,336,706 - 42,359,932 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,340,323 - 42,359,921 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,508,097 - 43,528,395 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01244,121,690 - 44,141,988 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,182,198 - 43,202,496 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,101,012 - 48,121,281 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,101,673 - 48,121,270 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01249,887,275 - 49,907,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,372,586 - 43,381,544 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11243,232,259 - 43,243,592 (+)NCBI
Celera1243,948,971 - 43,969,762 (+)NCBICelera
Cytogenetic Map12q16NCBI
Foxn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554559,183,475 - 9,210,506 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554559,182,405 - 9,210,365 (+)NCBIChiLan1.0ChiLan1.0
FOXN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210117,344,767 - 117,376,042 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112117,341,165 - 117,372,442 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012106,855,308 - 106,886,508 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112110,250,547 - 110,280,876 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,251,449 - 110,280,025 (-)Ensemblpanpan1.1panPan2
FOXN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,730,638 - 17,757,173 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,728,878 - 17,755,602 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2618,044,121 - 18,070,855 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02618,073,809 - 18,100,778 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2618,072,097 - 18,099,008 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12618,253,264 - 18,279,991 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02618,064,663 - 18,091,420 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02618,083,721 - 18,110,688 (+)NCBIUU_Cfam_GSD_1.0
Foxn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,395,447 - 144,415,277 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367691,062,061 - 1,080,444 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367691,061,907 - 1,081,350 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11441,589,128 - 41,614,488 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,135,477 - 44,145,796 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111104,499,654 - 104,536,338 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11104,499,633 - 104,534,275 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037140,572,888 - 140,604,649 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000013079   ⟹   ENSHGLP00000012942
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474711,123,615 - 11,149,571 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000013080   ⟹   ENSHGLP00000012943
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474711,123,615 - 11,149,571 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000013081   ⟹   ENSHGLP00000012944
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474711,123,820 - 11,147,766 (+)Ensembl
RefSeq Acc Id: XM_021257310   ⟹   XP_021112969
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474711,123,614 - 11,149,505 (+)NCBI
RefSeq Acc Id: XM_021257312   ⟹   XP_021112971
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474711,123,614 - 11,147,766 (+)NCBI
RefSeq Acc Id: XM_021257313   ⟹   XP_021112972
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474711,122,463 - 11,147,766 (+)NCBI
RefSeq Acc Id: XM_021257314   ⟹   XP_021112973
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474711,123,614 - 11,147,766 (+)NCBI
RefSeq Acc Id: XM_021257315   ⟹   XP_021112974
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474711,123,614 - 11,147,766 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021112972   ⟸   XM_021257313
- Peptide Label: isoform X3
- UniProtKB: G5BL20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112969   ⟸   XM_021257310
- Peptide Label: isoform X1
- UniProtKB: G5BL20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112971   ⟸   XM_021257312
- Peptide Label: isoform X2
- UniProtKB: G5BL20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112973   ⟸   XM_021257314
- Peptide Label: isoform X4
- UniProtKB: G5BL20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112974   ⟸   XM_021257315
- Peptide Label: isoform X5
- UniProtKB: G5BL20 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012944   ⟸   ENSHGLT00000013081
RefSeq Acc Id: ENSHGLP00000012942   ⟸   ENSHGLT00000013079
RefSeq Acc Id: ENSHGLP00000012943   ⟸   ENSHGLT00000013080


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009255 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000013079 ENTREZGENE
  ENSHGLT00000013080 ENTREZGENE
  ENSHGLT00000013081 ENTREZGENE
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/TrEMBL
  FOXN1_4 UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report hgl:101710766 UniProtKB/TrEMBL
NCBI Gene Foxn4 ENTREZGENE
PANTHER FORK-HEAD DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  FORKHEAD BOX PROTEIN N1 UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/TrEMBL
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt G5BL20 ENTREZGENE, UniProtKB/TrEMBL