Dcaf15 (DDB1 and CUL4 associated factor 15) - Rat Genome Database

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Gene: Dcaf15 (DDB1 and CUL4 associated factor 15) Heterocephalus glaber
Analyze
Symbol: Dcaf15
Name: DDB1 and CUL4 associated factor 15
RGD ID: 18927471
Description: ENCODES a protein that exhibits small molecule binding (ortholog); INVOLVED IN protein polyubiquitination (ortholog); regulation of natural killer cell activation (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DDB1- and CUL4-associated factor 15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,223,429 - 1,230,946 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249011,223,417 - 1,230,947 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dcaf15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,223,429 - 1,230,946 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249011,223,417 - 1,230,947 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DCAF15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381913,952,509 - 13,961,449 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1913,952,509 - 13,961,449 (+)EnsemblGRCh38hg38GRCh38
GRCh371914,063,321 - 14,072,261 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,924,319 - 13,933,256 (+)NCBINCBI36Build 36hg18NCBI36
Celera1913,956,945 - 13,965,882 (+)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1913,634,587 - 13,643,524 (+)NCBIHuRef
CHM1_11914,063,859 - 14,072,796 (+)NCBICHM1_1
T2T-CHM13v2.01914,078,793 - 14,087,733 (+)NCBIT2T-CHM13v2.0
Dcaf15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,823,698 - 84,831,426 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,823,701 - 84,831,397 (-)EnsemblGRCm39 Ensembl
GRCm38884,097,069 - 84,104,797 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,097,072 - 84,104,768 (-)EnsemblGRCm38mm10GRCm38
MGSCv37886,620,971 - 86,628,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,987,180 - 86,994,878 (-)NCBIMGSCv36mm8
Celera888,392,962 - 88,401,747 (-)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.3NCBI
Dcaf15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,958,693 - 40,966,043 (+)NCBIGRCr8
mRatBN7.21924,053,925 - 24,061,277 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,053,925 - 24,061,277 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1930,874,879 - 30,882,226 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01931,529,287 - 31,536,635 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,752,071 - 33,759,419 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,212,469 - 25,219,803 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,212,661 - 25,220,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,189,603 - 36,197,003 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,737,953 - 25,745,353 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11925,742,787 - 25,750,170 (+)NCBI
Celera1923,602,012 - 23,609,354 (+)NCBICelera
Cytogenetic Map19q11NCBI
Dcaf15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,701,701 - 32,710,051 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,701,701 - 32,710,051 (+)NCBIChiLan1.0ChiLan1.0
DCAF15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22018,881,636 - 18,890,644 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11917,882,512 - 17,891,522 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01913,514,672 - 13,523,689 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,243,793 - 14,252,804 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,243,793 - 14,252,804 (+)Ensemblpanpan1.1panPan2
DCAF15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,519,435 - 48,527,701 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,519,464 - 48,527,363 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,393,577 - 48,401,385 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,037,325 - 49,045,132 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,037,325 - 49,045,108 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,248,348 - 48,256,144 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,674,798 - 48,682,596 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,917,922 - 48,925,727 (-)NCBIUU_Cfam_GSD_1.0
Dcaf15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,691,469 - 207,698,654 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,655,544 - 2,662,834 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,656,072 - 2,663,237 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCAF15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,205,659 - 65,213,518 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,205,657 - 65,213,514 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,479,797 - 65,487,661 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCAF15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,607,738 - 12,617,046 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl612,607,753 - 12,619,717 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660747,038,141 - 7,047,468 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004872456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01101745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000015139   ⟹   ENSHGLP00000014989
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249011,223,429 - 1,230,946 (+)Ensembl
RefSeq Acc Id: XM_004872456   ⟹   XP_004872513
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249011,223,417 - 1,230,947 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004872513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014989
Reference Protein Sequences
RefSeq Acc Id: XP_004872513   ⟸   XM_004872456
- UniProtKB: G5BYU2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000014989   ⟸   ENSHGLT00000015139


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010729 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015139 ENTREZGENE
InterPro DCAF15 UniProtKB/TrEMBL
  DCAF15_C UniProtKB/TrEMBL
  DCAF15_WD40 UniProtKB/TrEMBL
NCBI Gene Dcaf15 ENTREZGENE
PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 15 UniProtKB/TrEMBL
  DDB1- AND CUL4-ASSOCIATED FACTOR 15 UniProtKB/TrEMBL
Pfam DCAF15_WD40 UniProtKB/TrEMBL
UniProt G5BYU2 ENTREZGENE, UniProtKB/TrEMBL