Rax (retina and anterior neural fold homeobox) - Rat Genome Database

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Gene: Rax (retina and anterior neural fold homeobox) Heterocephalus glaber
Analyze
Symbol: Rax
Name: retina and anterior neural fold homeobox
RGD ID: 18926321
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN brain development (ortholog); camera-type eye development (ortholog); hypothalamus development (ortholog); ASSOCIATED WITH Anophthalmia (ortholog); Craniofacial Abnormalities (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinal homeobox protein Rx
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247924,652,493 - 4,656,826 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247924,652,430 - 4,657,048 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rax
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247924,652,493 - 4,656,826 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247924,652,430 - 4,657,048 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RAX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381859,267,038 - 59,273,454 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1859,267,035 - 59,274,086 (-)EnsemblGRCh38hg38GRCh38
GRCh371856,934,270 - 56,940,686 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361855,085,247 - 55,091,605 (-)NCBINCBI36Build 36hg18NCBI36
Celera1853,652,123 - 53,658,480 (-)NCBICelera
Cytogenetic Map18q21.32NCBI
HuRef1853,643,456 - 53,649,718 (-)NCBIHuRef
CHM1_11856,929,439 - 56,935,862 (-)NCBICHM1_1
T2T-CHM13v2.01859,468,558 - 59,474,973 (-)NCBIT2T-CHM13v2.0
Rax
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391866,067,710 - 66,072,160 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1866,061,348 - 66,072,858 (-)EnsemblGRCm39 Ensembl
GRCm381865,934,639 - 65,939,089 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1865,928,277 - 65,939,787 (-)EnsemblGRCm38mm10GRCm38
MGSCv371866,094,293 - 66,098,743 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361866,060,005 - 66,064,442 (-)NCBIMGSCv36mm8
Celera1867,210,139 - 67,214,590 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1839.03NCBI
Rax
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81861,733,322 - 61,737,444 (-)NCBIGRCr8
mRatBN7.21859,463,347 - 59,467,469 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1859,463,737 - 59,467,431 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1861,557,510 - 61,561,206 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01862,256,193 - 62,259,889 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01860,084,163 - 60,087,857 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01861,638,352 - 61,642,056 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1861,638,352 - 61,642,056 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01860,835,143 - 60,838,847 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41862,567,485 - 62,571,191 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11862,640,685 - 62,644,392 (+)NCBI
Celera1857,585,618 - 57,589,312 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Rax
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540243,410,404 - 43,414,306 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540243,408,933 - 43,414,697 (-)NCBIChiLan1.0ChiLan1.0
RAX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21776,813,222 - 76,819,634 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11862,505,836 - 62,512,248 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01852,664,243 - 52,669,177 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11855,990,984 - 55,995,469 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1855,990,984 - 55,995,469 (-)Ensemblpanpan1.1panPan2
RAX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1116,940,671 - 16,945,127 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl116,940,658 - 16,943,633 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha117,915,783 - 17,920,202 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0116,817,416 - 16,821,898 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl116,817,416 - 16,821,898 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1116,853,025 - 16,857,444 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0116,773,789 - 16,778,200 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0117,035,324 - 17,039,744 (+)NCBIUU_Cfam_GSD_1.0
Rax
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494430,212,492 - 30,218,299 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364975,452,800 - 5,456,905 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364975,451,055 - 5,457,334 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1161,678,955 - 161,683,060 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11161,679,154 - 161,683,486 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21179,257,056 - 179,260,894 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11820,464,417 - 20,469,281 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1820,464,657 - 20,468,812 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660605,117,972 - 5,124,458 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004858423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01066008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000004365   ⟹   ENSHGLP00000004305
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247924,652,493 - 4,656,826 (-)Ensembl
RefSeq Acc Id: XM_004858423   ⟹   XP_004858480
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247924,652,430 - 4,657,048 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004858480 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004305
Reference Protein Sequences
RefSeq Acc Id: XP_004858480   ⟸   XM_004858423
RefSeq Acc Id: ENSHGLP00000004305   ⟸   ENSHGLT00000004365


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003150 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004365 ENTREZGENE
NCBI Gene Rax ENTREZGENE