Cxcl17 (C-X-C motif chemokine ligand 17) - Rat Genome Database

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Gene: Cxcl17 (C-X-C motif chemokine ligand 17) Heterocephalus glaber
Analyze
Symbol: Cxcl17
Name: C-X-C motif chemokine ligand 17
RGD ID: 18926299
Description: INVOLVED IN positive regulation of ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); schizophrenia (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-X-C motif chemokine 17; VEGF co-regulated chemokine 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907345,800 - 359,450 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907345,786 - 359,450 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cxcl17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907345,800 - 359,450 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907345,786 - 359,450 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CXCL17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381942,428,278 - 42,442,946 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1942,428,278 - 42,442,946 (-)EnsemblGRCh38hg38GRCh38
GRCh371942,932,430 - 42,947,098 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,624,535 - 47,638,976 (-)NCBINCBI36Build 36hg18NCBI36
Celera1939,733,484 - 39,747,927 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1939,362,820 - 39,377,263 (-)NCBIHuRef
CHM1_11942,934,348 - 42,948,806 (-)NCBICHM1_1
T2T-CHM13v2.01945,247,666 - 45,262,340 (-)NCBIT2T-CHM13v2.0
Cxcl17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,099,478 - 25,112,311 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl725,099,478 - 25,112,311 (-)EnsemblGRCm39 Ensembl
GRCm38725,400,053 - 25,412,886 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,400,053 - 25,412,886 (-)EnsemblGRCm38mm10GRCm38
MGSCv37726,185,072 - 26,197,905 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36725,108,813 - 25,121,646 (-)NCBIMGSCv36mm8
Celera720,015,378 - 20,028,341 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.8NCBI
Cxcl17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,112,561 - 90,124,648 (-)NCBIGRCr8
mRatBN7.2180,984,751 - 80,996,842 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,984,964 - 80,996,726 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,377,164 - 86,388,927 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,928,403 - 94,940,107 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,132,948 - 88,144,711 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,267,381 - 82,279,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,267,381 - 82,279,145 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,530,854 - 83,542,736 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,683,134 - 80,694,898 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,761,243 - 80,772,960 (-)NCBI
Celera175,426,585 - 75,438,349 (-)NCBICelera
Cytogenetic Map1q21NCBI
Cxcl17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555495,445 - 509,788 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955555495,437 - 509,788 (+)NCBIChiLan1.0ChiLan1.0
CXCL17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22048,533,795 - 48,547,898 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11950,401,716 - 50,428,109 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01939,315,929 - 39,331,651 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11947,908,174 - 47,922,120 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,908,179 - 47,922,120 (-)Ensemblpanpan1.1panPan2
CXCL17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11111,969,808 - 111,986,767 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1111,970,131 - 111,986,433 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,394,613 - 111,411,457 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,580,880 - 112,597,756 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,581,089 - 112,597,759 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,135,121 - 112,152,091 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,770,648 - 111,787,320 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,697,479 - 112,714,340 (+)NCBIUU_Cfam_GSD_1.0
Cxcl17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,715,971 - 15,771,909 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706113,586 - 119,374 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493670662,417 - 119,278 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100737180
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl650,051,061 - 50,063,295 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1650,037,606 - 50,063,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,966,736 - 45,974,149 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CXCL17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,631,508 - 36,651,508 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl636,631,565 - 36,649,986 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607314,877,911 - 14,894,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000013622   ⟹   ENSHGLP00000013481
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624907345,800 - 359,450 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000013623   ⟹   ENSHGLP00000013482
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624907345,977 - 359,151 (+)Ensembl
RefSeq Acc Id: XM_004873008   ⟹   XP_004873065
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624907345,786 - 359,450 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004873065 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013481
  ENSHGLP00100018137
GenBank Protein JAN96561 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004873065   ⟸   XM_004873008
- UniProtKB: A0A0P6J2P1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000013481   ⟸   ENSHGLT00000013622
RefSeq Acc Id: ENSHGLP00000013482   ⟸   ENSHGLT00000013623


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009638 Ensembl, ENTREZGENE
  ENSHGLG00100013370 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013622 ENTREZGENE
  ENSHGLT00100018327 UniProtKB/TrEMBL
InterPro CXCL17 UniProtKB/TrEMBL
KEGG Report hgl:101708913 UniProtKB/TrEMBL
NCBI Gene Cxcl17 ENTREZGENE
PANTHER C-X-C MOTIF CHEMOKINE 17 UniProtKB/TrEMBL
  PTHR37351 UniProtKB/TrEMBL
Pfam CXCL17 UniProtKB/TrEMBL
UniProt A0A0P6J2P1 ENTREZGENE, UniProtKB/TrEMBL