Lnpk (lunapark, ER junction formation factor) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Lnpk (lunapark, ER junction formation factor) Heterocephalus glaber
Analyze
Symbol: Lnpk
Name: lunapark, ER junction formation factor
RGD ID: 18925510
Description: ENCODES a protein that exhibits identical protein binding (inferred); metal ion binding (inferred); INVOLVED IN blood coagulation (ortholog); embryonic digit morphogenesis (ortholog); embryonic forelimb morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); NEURODEVELOPMENTAL DISORDER WITH EPILEPSY AND HYPOPLASIA OF THE CORPUS CALLOSUM (ortholog); split hand-foot malformation 5 (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); endoplasmic reticulum tubular network (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kiaa1715; protein lunapark
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478713,048,690 - 13,120,751 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478713,049,079 - 13,127,052 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lnpk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478713,048,690 - 13,120,751 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478713,049,079 - 13,127,052 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LNPK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382175,923,882 - 176,002,820 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2175,923,882 - 176,002,839 (-)EnsemblGRCh38hg38GRCh38
GRCh372176,788,610 - 176,867,548 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362176,498,656 - 176,575,264 (-)NCBINCBI36Build 36hg18NCBI36
Celera2170,399,546 - 170,476,159 (-)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2168,667,783 - 168,744,413 (-)NCBIHuRef
CHM1_12176,796,281 - 176,872,883 (-)NCBICHM1_1
T2T-CHM13v2.02176,411,993 - 176,500,878 (-)NCBIT2T-CHM13v2.0
Lnpk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39274,345,180 - 74,409,802 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl274,350,635 - 74,409,779 (-)EnsemblGRCm39 Ensembl
GRCm38274,514,836 - 74,579,458 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl274,520,291 - 74,579,435 (-)EnsemblGRCm38mm10GRCm38
MGSCv37274,352,894 - 74,417,005 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36274,315,675 - 74,379,783 (-)NCBIMGSCv36mm8
Celera276,182,705 - 76,246,724 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.13NCBI
Lnpk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8379,826,318 - 79,894,514 (-)NCBIGRCr8
mRatBN7.2359,418,872 - 59,487,029 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl359,424,286 - 59,486,518 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx362,813,223 - 62,874,123 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0371,396,872 - 71,457,769 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0369,161,951 - 69,222,841 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0361,432,128 - 61,494,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl361,433,863 - 61,494,778 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0367,900,112 - 67,962,573 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4357,137,229 - 57,198,818 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1357,031,956 - 57,094,736 (-)NCBI
Celera358,949,128 - 59,010,147 (-)NCBICelera
Cytogenetic Map3q23NCBI
Lnpk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540320,654,961 - 20,729,954 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540320,654,961 - 20,728,173 (+)NCBIChiLan1.0ChiLan1.0
LNPK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21378,572,806 - 78,674,347 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B78,587,781 - 78,691,861 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B63,197,335 - 63,279,473 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B180,903,885 - 180,989,448 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B180,909,968 - 180,989,448 (-)Ensemblpanpan1.1panPan2
LNPK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13619,731,523 - 19,809,349 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3619,732,276 - 19,808,769 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3619,740,199 - 19,819,198 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03619,870,925 - 19,950,253 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3619,867,671 - 19,949,695 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13619,946,765 - 20,024,436 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03619,947,698 - 20,025,343 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03620,059,130 - 20,137,012 (-)NCBIUU_Cfam_GSD_1.0
Lnpk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303136,872,311 - 136,940,112 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365095,427,278 - 5,493,999 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365095,426,759 - 5,493,574 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LNPK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1581,721,644 - 81,805,680 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11581,721,637 - 81,805,706 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21591,034,147 - 91,117,235 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LNPK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11061,498,749 - 61,575,166 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1061,499,617 - 61,574,794 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040138,033,694 - 138,116,884 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005546   ⟹   ENSHGLP00000005475
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478713,048,690 - 13,120,751 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000005547   ⟹   ENSHGLP00000005476
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478713,048,690 - 13,120,751 (-)Ensembl
RefSeq Acc Id: XM_004857714   ⟹   XP_004857771
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478713,049,081 - 13,126,485 (-)NCBI
RefSeq Acc Id: XM_004857716   ⟹   XP_004857773
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478713,049,990 - 13,126,489 (-)NCBI
RefSeq Acc Id: XM_021238577   ⟹   XP_021094236
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478713,049,079 - 13,127,052 (-)NCBI
RefSeq Acc Id: XM_021238578   ⟹   XP_021094237
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478713,055,509 - 13,126,488 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857771 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857773 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094236 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094237 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005475
  ENSHGLP00000005476
  ENSHGLP00100010618
GenBank Protein JAO01210 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021094236   ⟸   XM_021238577
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JCY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857771   ⟸   XM_004857714
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JCY4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857773   ⟸   XM_004857716
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021094237   ⟸   XM_021238578
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000005476   ⟸   ENSHGLT00000005547
RefSeq Acc Id: ENSHGLP00000005475   ⟸   ENSHGLT00000005546


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004015 Ensembl, ENTREZGENE
  ENSHGLG00100007889 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000005546 ENTREZGENE
  ENSHGLT00000005547 ENTREZGENE
  ENSHGLT00100010742 UniProtKB/TrEMBL
InterPro Lnp UniProtKB/TrEMBL
  Lunapark_dom UniProtKB/TrEMBL
KEGG Report hgl:101718841 UniProtKB/TrEMBL
NCBI Gene Lnpk ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK UniProtKB/TrEMBL
  PTHR22166 UniProtKB/TrEMBL
Pfam zinc_ribbon_10 UniProtKB/TrEMBL
UniProt A0A0P6JCY4 ENTREZGENE, UniProtKB/TrEMBL