Rab33a (RAB33A, member RAS oncogene family) - Rat Genome Database

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Gene: Rab33a (RAB33A, member RAS oncogene family) Heterocephalus glaber
Analyze
Symbol: Rab33a
Name: RAB33A, member RAS oncogene family
RGD ID: 18924927
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN antigen processing and presentation (inferred); Rab protein signal transduction (inferred); ASSOCIATED WITH Auditory Neuropathy (ortholog); autistic disorder (ortholog); autosomal recessive nonsyndromic deafness 9 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ras-related protein Rab-33A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247979,389,732 - 9,401,312 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247979,389,651 - 9,401,260 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rab33a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247979,389,732 - 9,401,312 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247979,389,651 - 9,401,260 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RAB33A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X130,110,623 - 130,184,870 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX130,171,962 - 130,184,870 (+)EnsemblGRCh38hg38GRCh38
GRCh37X129,305,936 - 129,318,844 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X129,133,454 - 129,146,525 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X129,031,307 - 129,044,378NCBI
CeleraX129,692,335 - 129,705,325 (+)NCBICelera
Cytogenetic MapXq26.1NCBI
HuRefX118,701,562 - 118,715,130 (+)NCBIHuRef
CHM1_1X129,217,402 - 129,230,486 (+)NCBICHM1_1
T2T-CHM13v2.0X128,429,426 - 128,503,675 (+)NCBIT2T-CHM13v2.0
Rab33a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X47,602,540 - 47,619,112 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX47,608,162 - 47,619,109 (+)EnsemblGRCm39 Ensembl
GRCm38X48,513,663 - 48,530,240 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX48,519,285 - 48,530,232 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X45,872,647 - 45,883,409 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X44,764,097 - 44,774,859 (+)NCBIMGSCv36mm8
CeleraX36,021,110 - 36,031,749 (+)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX25.68NCBI
Rab33a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X132,572,133 - 132,584,255 (+)NCBIGRCr8
mRatBN7.2X127,694,219 - 127,706,378 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX127,694,964 - 127,706,378 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX129,820,706 - 129,832,102 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X133,391,515 - 133,402,927 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X130,917,865 - 130,929,261 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X135,348,799 - 135,360,204 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX135,348,436 - 135,360,203 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X135,420,269 - 135,431,674 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X134,913,903 - 134,925,308 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX126,643,393 - 126,654,798 (+)NCBICelera
Cytogenetic MapXq36NCBI
Rab33a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554734,875,202 - 4,887,177 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554734,875,230 - 4,891,898 (-)NCBIChiLan1.0ChiLan1.0
RAB33A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X129,589,775 - 129,605,230 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X129,593,388 - 129,608,845 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X119,298,428 - 119,311,625 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X129,591,231 - 129,605,214 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX129,591,222 - 129,605,214 (+)Ensemblpanpan1.1panPan2
RAB33A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X101,311,752 - 101,322,825 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX101,312,611 - 101,322,689 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX87,489,539 - 87,500,593 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X103,168,072 - 103,179,136 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX103,168,952 - 103,178,995 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X100,585,386 - 100,596,426 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X102,431,428 - 102,442,487 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X102,209,808 - 102,220,845 (+)NCBIUU_Cfam_GSD_1.0
Rab33a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X99,550,127 - 99,561,728 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364791,425,722 - 1,437,374 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364791,425,765 - 1,437,338 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB33A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX106,712,398 - 106,723,404 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X106,708,402 - 106,723,803 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X122,480,414 - 122,491,875 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB33A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X105,421,709 - 105,437,206 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX105,424,290 - 105,437,169 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606542,850,170 - 42,864,050 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026261   ⟹   ENSHGLP00000026031
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247979,389,732 - 9,401,312 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000026262   ⟹   ENSHGLP00000026032
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247979,389,732 - 9,401,312 (+)Ensembl
RefSeq Acc Id: XM_004860057   ⟹   XP_004860114
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247979,389,651 - 9,401,260 (+)NCBI
RefSeq Acc Id: XM_021240612   ⟹   XP_021096271
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247979,389,999 - 9,401,260 (+)NCBI
RefSeq Acc Id: XM_021240613   ⟹   XP_021096272
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247979,389,807 - 9,401,260 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004860114 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096271 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096272 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB03572 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026031
  ENSHGLP00000026032
  ENSHGLP00100000344
GenBank Protein JAN99232 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004860114   ⟸   XM_004860057
- UniProtKB: G5B2Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096272   ⟸   XM_021240613
- UniProtKB: G5B2Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096271   ⟸   XM_021240612
- UniProtKB: G5B2Q9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026032   ⟸   ENSHGLT00000026262
RefSeq Acc Id: ENSHGLP00000026031   ⟸   ENSHGLT00000026261


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018536 Ensembl, ENTREZGENE
  ENSHGLG00100000293 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000026261 ENTREZGENE
  ENSHGLT00000026262 ENTREZGENE
  ENSHGLT00100000374 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab33A/B UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report hgl:101699521 UniProtKB/TrEMBL
NCBI Gene Rab33a ENTREZGENE
PANTHER PTHR47978 UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-33A UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt G5B2Q9 ENTREZGENE, UniProtKB/TrEMBL