Acp6 (acid phosphatase 6, lysophosphatidic) - Rat Genome Database

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Gene: Acp6 (acid phosphatase 6, lysophosphatidic) Heterocephalus glaber
Analyze
Symbol: Acp6
Name: acid phosphatase 6, lysophosphatidic
RGD ID: 18924066
Description: ENCODES a protein that exhibits lysophosphatidic acid phosphatase activity (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); phospholipid metabolic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cataract 1 multiple types (ortholog); Cerebral Visual Impairment and Intellectual Disability (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Lysophosphatidic acid phosphatase type 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477216,688,493 - 16,707,189 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477216,661,720 - 16,707,676 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Acp6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477216,688,493 - 16,707,189 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477216,661,720 - 16,707,676 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ACP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,629,658 - 147,670,524 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,629,652 - 147,670,524 (-)EnsemblGRCh38hg38GRCh38
GRCh371147,114,029 - 147,142,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361145,585,792 - 145,609,258 (-)NCBINCBI36Build 36hg18NCBI36
Build 341144,343,983 - 144,367,430NCBI
Celera1121,841,363 - 121,864,830 (+)NCBICelera
Cytogenetic Map1q21.2NCBI
HuRef1120,532,766 - 120,556,091 (-)NCBIHuRef
CHM1_11149,015,492 - 149,038,638 (-)NCBICHM1_1
T2T-CHM13v2.01147,137,207 - 147,181,884 (+)NCBIT2T-CHM13v2.0
Acp6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39397,066,070 - 97,083,892 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl397,066,093 - 97,084,615 (+)EnsemblGRCm39 Ensembl
GRCm38397,158,752 - 97,176,576 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl397,158,777 - 97,177,299 (+)EnsemblGRCm38mm10GRCm38
MGSCv37396,962,700 - 96,980,499 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36397,244,196 - 97,261,973 (+)NCBIMGSCv36mm8
Celera398,566,896 - 98,584,696 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map342.04NCBI
Acp6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82187,400,786 - 187,421,877 (+)NCBIGRCr8
mRatBN7.22184,711,975 - 184,733,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,711,619 - 184,733,017 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2192,353,699 - 192,374,795 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02190,151,174 - 190,172,232 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,986,281 - 185,007,377 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02199,284,177 - 199,305,793 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2199,283,909 - 199,305,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02218,767,629 - 218,789,274 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,942,045 - 191,964,328 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,904,489 - 191,927,084 (+)NCBI
Celera2177,207,068 - 177,227,157 (+)NCBICelera
Cytogenetic Map2q34NCBI
Acp6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955568744,836 - 764,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955568744,453 - 764,402 (+)NCBIChiLan1.0ChiLan1.0
ACP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21102,037,347 - 102,109,222 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11101,625,748 - 101,697,634 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01123,070,751 - 123,114,327 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11112,417,107 - 112,442,743 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1112,417,138 - 112,459,176 (+)Ensemblpanpan1.1panPan2
ACP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11758,213,016 - 58,230,934 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1758,193,586 - 58,230,491 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1757,679,323 - 57,697,242 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01759,207,991 - 59,225,814 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1759,207,991 - 59,225,812 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11758,080,944 - 58,098,811 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01758,141,420 - 58,159,292 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01758,867,915 - 58,885,764 (-)NCBIUU_Cfam_GSD_1.0
Acp6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505820,295,689 - 20,316,579 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936867171,799 - 187,432 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936867171,808 - 189,266 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,930,345 - 99,968,412 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,930,343 - 99,948,056 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,763,766 - 109,781,468 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603814,569,059 - 14,593,099 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006653   ⟹   ENSHGLP00000006571
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477216,688,493 - 16,707,189 (-)Ensembl
RefSeq Acc Id: XM_004853894   ⟹   XP_004853951
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,687,959 - 16,707,674 (-)NCBI
RefSeq Acc Id: XM_013075556   ⟹   XP_012931010
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,663,806 - 16,707,676 (-)NCBI
RefSeq Acc Id: XM_021265802   ⟹   XP_021121461
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,662,200 - 16,707,676 (-)NCBI
RefSeq Acc Id: XM_021265803   ⟹   XP_021121462
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,661,720 - 16,707,676 (-)NCBI
RefSeq Acc Id: XR_001184063
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,663,806 - 16,707,675 (-)NCBI
RefSeq Acc Id: XR_002398007
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,665,327 - 16,707,674 (-)NCBI
RefSeq Acc Id: XR_205641
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477216,663,806 - 16,707,674 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004853951 (Get FASTA)   NCBI Sequence Viewer  
  XP_012931010 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121461 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121462 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB06676 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006571
GenBank Protein JAN98847 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021121462   ⟸   XM_021265803
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021121461   ⟸   XM_021265802
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012931010   ⟸   XM_013075556
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004853951   ⟸   XM_004853894
- Peptide Label: isoform X1
- UniProtKB: G5BBL5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006571   ⟸   ENSHGLT00000006653


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004803 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006653 ENTREZGENE
Gene3D-CATH 3.40.50.1240 UniProtKB/TrEMBL
InterPro Acid_Pase_AS UniProtKB/TrEMBL
  His_Pase_clade-2 UniProtKB/TrEMBL
  His_PPase_superfam UniProtKB/TrEMBL
KEGG Report hgl:101725554 UniProtKB/TrEMBL
NCBI Gene Acp6 ENTREZGENE
PANTHER ACID PHOSPHATASE-RELATED UniProtKB/TrEMBL
  LYSOPHOSPHATIDIC ACID PHOSPHATASE TYPE 6 UniProtKB/TrEMBL
Pfam His_Phos_2 UniProtKB/TrEMBL
PROSITE HIS_ACID_PHOSPHAT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53254 UniProtKB/TrEMBL
UniProt G5BBL5 ENTREZGENE, UniProtKB/TrEMBL