Gypa (glycophorin A (MNS blood group)) - Rat Genome Database

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Gene: Gypa (glycophorin A (MNS blood group)) Heterocephalus glaber
Analyze
Symbol: Gypa
Name: glycophorin A (MNS blood group)
RGD ID: 18922479
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of response to osmotic stress (ortholog); ASSOCIATED WITH malaria (ortholog); Skin Neoplasms (ortholog); FOUND IN ankyrin-1 complex (ortholog); cytosol (ortholog); external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycophorin-A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248533,132,961 - 3,158,461 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
malaria  (ISO)
Skin Neoplasms  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gypa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248533,132,961 - 3,158,461 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GYPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384144,109,303 - 144,140,718 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4144,109,303 - 144,140,751 (-)EnsemblGRCh38hg38GRCh38
GRCh374145,030,456 - 145,061,871 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364145,249,906 - 145,281,294 (-)NCBINCBI36Build 36hg18NCBI36
Build 344145,388,061 - 145,419,449NCBI
Celera4142,359,859 - 142,391,286 (-)NCBICelera
Cytogenetic Map4q31.21NCBI
HuRef4140,759,973 - 140,791,405 (-)NCBIHuRef
CHM1_14145,007,517 - 145,038,952 (-)NCBICHM1_1
T2T-CHM13v2.04147,426,704 - 147,458,090 (-)NCBIT2T-CHM13v2.0
Gypa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39881,220,674 - 81,237,414 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl881,220,410 - 81,237,171 (+)EnsemblGRCm39 Ensembl
GRCm38880,494,045 - 80,510,785 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl880,493,781 - 80,510,542 (+)EnsemblGRCm38mm10GRCm38
MGSCv37883,017,944 - 83,034,684 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36883,389,289 - 83,406,230 (+)NCBIMGSCv36mm8
Celera884,765,672 - 84,782,460 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map838.27NCBI
Gypa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81944,354,669 - 44,370,304 (-)NCBIGRCr8
mRatBN7.21927,450,304 - 27,465,940 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1927,450,308 - 27,465,822 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1934,307,302 - 34,322,827 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01934,961,353 - 34,976,878 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01937,182,428 - 37,197,955 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01931,115,545 - 31,131,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01942,018,634 - 42,034,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41929,301,178 - 29,318,617 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1926,966,530 - 26,982,092 (-)NCBICelera
Cytogenetic Map19q11NCBI
GYPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23141,988,917 - 142,020,381 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14142,353,408 - 142,384,832 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04136,455,397 - 136,486,858 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14147,987,563 - 148,148,082 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4147,987,750 - 148,019,005 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl4148,117,479 - 148,148,315 (-)Ensemblpanpan1.1panPan2
GYPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11543,018,705 - 43,049,726 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1543,018,708 - 43,049,665 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1543,410,710 - 43,441,658 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01543,679,013 - 43,710,005 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1543,679,016 - 43,709,966 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11542,955,325 - 42,986,264 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01543,039,457 - 43,070,052 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01543,310,881 - 43,341,844 (-)NCBIUU_Cfam_GSD_1.0
Gypa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530147,241,679 - 47,270,744 (+)NCBIHiC_Itri_2
GYPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1884,037,574 - 84,067,096 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2889,194,118 - 89,222,888 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GYPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1790,702,645 - 90,739,106 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603770,291,762 - 70,332,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004868906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01091165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_004868906   ⟹   XP_004868963
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248533,132,961 - 3,158,461 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004868963 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004868963   ⟸   XM_004868906


Additional Information

Database Acc Id Source(s)
NCBI Gene Gypa ENTREZGENE