Prpf40a (pre-mRNA processing factor 40 homolog A) - Rat Genome Database

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Gene: Prpf40a (pre-mRNA processing factor 40 homolog A) Heterocephalus glaber
Analyze
Symbol: Prpf40a
Name: pre-mRNA processing factor 40 homolog A
RGD ID: 18922424
Description: ENCODES a protein that exhibits proline-rich region binding (ortholog); INVOLVED IN cell migration (ortholog); cytoskeleton organization (ortholog); regulation of cell shape (ortholog); FOUND IN nuclear matrix (ortholog); nuclear speck (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pre-mRNA-processing factor 40 homolog A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248664,369,605 - 4,430,816 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Prpf40a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248664,369,605 - 4,430,816 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PRPF40A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382152,651,732 - 152,718,019 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2152,651,593 - 152,718,012 (-)EnsemblGRCh38hg38GRCh38
GRCh372153,508,246 - 153,574,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362153,216,353 - 153,282,221 (-)NCBINCBI36Build 36hg18NCBI36
Celera2147,122,555 - 147,188,431 (-)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2145,394,474 - 145,460,345 (-)NCBIHuRef
CHM1_12153,514,130 - 153,580,008 (-)NCBICHM1_1
T2T-CHM13v2.02153,104,294 - 153,170,565 (-)NCBIT2T-CHM13v2.0
Prpf40a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39253,024,714 - 53,081,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl253,024,716 - 53,081,714 (-)EnsemblGRCm39 Ensembl
GRCm38253,134,702 - 53,191,438 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl253,134,704 - 53,191,284 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl253,134,704 - 53,191,702 (-)EnsemblGRCm38mm10GRCm38
MGSCv37252,997,509 - 53,050,221 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36252,960,484 - 53,013,196 (-)NCBIMGSCv36mm8
Celera254,880,090 - 54,932,591 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map230.69NCBI
Prpf40a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8358,036,779 - 58,098,996 (-)NCBIGRCr8
mRatBN7.2337,625,585 - 37,689,859 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl337,627,690 - 37,690,886 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx341,001,890 - 41,062,025 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0349,586,708 - 49,646,842 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0347,371,550 - 47,431,684 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0338,680,583 - 38,741,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl338,682,146 - 38,741,113 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0343,778,141 - 43,839,268 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4334,661,461 - 34,721,438 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1334,557,496 - 34,618,041 (-)NCBI
Celera335,768,130 - 35,827,799 (-)NCBICelera
Cytogenetic Map3q12NCBI
Prpf40a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544018,083,838 - 18,128,701 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544018,083,838 - 18,128,701 (-)NCBIChiLan1.0ChiLan1.0
PRPF40A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21355,339,652 - 55,401,915 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B55,354,632 - 55,417,571 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B39,955,290 - 40,017,636 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B157,189,945 - 157,256,184 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B157,194,506 - 157,254,983 (-)Ensemblpanpan1.1panPan2
PRPF40A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11953,649,424 - 53,710,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,948,940 - 28,009,892 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01955,161,297 - 55,222,274 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1955,163,918 - 55,222,155 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11953,877,024 - 53,937,982 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01953,947,078 - 54,007,975 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01955,412,012 - 55,472,975 (-)NCBIUU_Cfam_GSD_1.0
Prpf40a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303116,596,815 - 116,654,368 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646924,963,905 - 25,018,961 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646924,963,691 - 25,019,961 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRPF40A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1560,386,596 - 60,439,807 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11560,388,582 - 60,440,478 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21567,034,695 - 67,085,766 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRPF40A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11038,086,971 - 38,151,726 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1038,088,281 - 38,151,371 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040161,416,070 - 161,480,948 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004870007   ⟹   XP_004870064
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248664,369,653 - 4,430,816 (+)NCBI
RefSeq Acc Id: XM_013067534   ⟹   XP_012922988
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248664,369,637 - 4,430,816 (+)NCBI
RefSeq Acc Id: XM_021248457   ⟹   XP_021104116
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248664,369,637 - 4,430,816 (+)NCBI
RefSeq Acc Id: XM_021248458   ⟹   XP_021104117
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248664,369,637 - 4,430,816 (+)NCBI
RefSeq Acc Id: XM_021248459   ⟹   XP_021104118
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248664,369,636 - 4,430,816 (+)NCBI
RefSeq Acc Id: XM_021248460   ⟹   XP_021104119
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248664,369,635 - 4,430,816 (+)NCBI
RefSeq Acc Id: XM_021248461   ⟹   XP_021104120
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248664,369,636 - 4,430,816 (+)NCBI
RefSeq Acc Id: XM_021248462   ⟹   XP_021104121
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248664,369,605 - 4,430,816 (+)NCBI
RefSeq Acc Id: XM_021248463   ⟹   XP_021104122
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248664,369,638 - 4,430,816 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021104121   ⟸   XM_021248462
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021104119   ⟸   XM_021248460
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021104118   ⟸   XM_021248459
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021104120   ⟸   XM_021248461
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021104116   ⟸   XM_021248457
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012922988   ⟸   XM_013067534
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021104117   ⟸   XM_021248458
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021104122   ⟸   XM_021248463
- Peptide Label: isoform X9
RefSeq Acc Id: XP_004870064   ⟸   XM_004870007
- Peptide Label: isoform X8


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001738 ENTREZGENE
Ensembl Transcript ENSHGLT00000002336 ENTREZGENE
NCBI Gene Prpf40a ENTREZGENE