Gcnt2 (glucosaminyl (N-acetyl) transferase 2 (I blood group)) - Rat Genome Database

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Gene: Gcnt2 (glucosaminyl (N-acetyl) transferase 2 (I blood group)) Heterocephalus glaber
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Symbol: Gcnt2
Name: glucosaminyl (N-acetyl) transferase 2 (I blood group)
RGD ID: 18921967
Description: ENCODES a protein that exhibits N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN maintenance of lens transparency (ortholog); negative regulation of cell-substrate adhesion (ortholog); positive regulation of cell migration (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 13 with adult i phenotype (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group); N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase; N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase, isoform C
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475615,257,623 - 15,313,668 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475615,231,222 - 15,342,469 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gcnt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475615,257,623 - 15,313,668 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475615,231,222 - 15,342,469 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GCNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38610,521,351 - 10,629,368 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl610,492,223 - 10,629,368 (+)EnsemblGRCh38hg38GRCh38
GRCh37610,521,584 - 10,629,601 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36610,636,697 - 10,737,587 (+)NCBINCBI36Build 36hg18NCBI36
Celera611,750,073 - 11,858,098 (+)NCBICelera
Cytogenetic Map6p24.3-p24.2NCBI
HuRef610,397,294 - 10,505,347 (+)NCBIHuRef
CHM1_1610,523,710 - 10,631,709 (+)NCBICHM1_1
T2T-CHM13v2.0610,389,059 - 10,497,066 (+)NCBIT2T-CHM13v2.0
Gcnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391341,013,417 - 41,114,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1341,013,230 - 41,114,368 (+)EnsemblGRCm39 Ensembl
GRCm381340,859,768 - 40,960,892 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1340,859,754 - 40,960,892 (+)EnsemblGRCm38mm10GRCm38
MGSCv371340,955,501 - 41,056,261 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361340,871,106 - 40,971,866 (+)NCBIMGSCv36mm8
Celera1341,943,688 - 42,044,977 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1320.12NCBI
Gcnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81724,002,592 - 24,107,339 (-)NCBIGRCr8
mRatBN7.21723,796,859 - 23,901,625 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1723,796,859 - 23,901,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1723,666,867 - 23,737,375 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01725,270,336 - 25,340,857 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01723,607,833 - 23,678,356 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01721,634,546 - 21,677,477 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1721,634,551 - 21,739,408 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01723,615,668 - 23,657,985 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01723,685,139 - 23,686,828 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41729,767,383 - 29,808,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11729,770,228 - 29,811,631 (-)NCBI
Celera1723,466,366 - 23,508,072 (-)NCBICelera
Cytogenetic Map17p12NCBI
GCNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2525,173,692 - 25,279,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1621,163,078 - 21,268,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0610,357,919 - 10,470,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1610,638,833 - 10,750,975 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl610,626,891 - 10,750,975 (+)Ensemblpanpan1.1panPan2
GCNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13510,304,741 - 10,387,746 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3510,305,350 - 10,385,672 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3510,253,572 - 10,336,564 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03510,408,935 - 10,491,996 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3510,409,093 - 10,491,994 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13510,263,504 - 10,321,630 (+)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.13510,238,491 - 10,252,850 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03510,279,205 - 10,368,498 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03511,605,949 - 11,688,956 (+)NCBIUU_Cfam_GSD_1.0
LOC101978685
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494614,040,501 - 14,097,520 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365342,309,480 - 2,388,249 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365342,311,217 - 2,366,327 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100152566
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,328,214 - 7,422,197 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,382,731 - 7,422,199 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.277,640,231 - 7,731,681 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GCNT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11761,533,622 - 61,607,702 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1761,533,314 - 61,642,659 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604410,540,562 - 10,642,529 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026059   ⟹   ENSHGLP00000025830
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475615,257,623 - 15,313,668 (-)Ensembl
RefSeq Acc Id: XM_004847706   ⟹   XP_004847763
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475615,258,295 - 15,292,643 (-)NCBI
RefSeq Acc Id: XM_013073250   ⟹   XP_012928704
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475615,258,295 - 15,292,643 (-)NCBI
RefSeq Acc Id: XM_021260671   ⟹   XP_021116330
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475615,258,295 - 15,332,545 (-)NCBI
RefSeq Acc Id: XM_021260672   ⟹   XP_021116331
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475615,258,295 - 15,313,653 (-)NCBI
RefSeq Acc Id: XM_021260673   ⟹   XP_021116332
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475615,258,295 - 15,332,550 (-)NCBI
RefSeq Acc Id: XM_021260675   ⟹   XP_021116334
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475615,258,295 - 15,342,469 (-)NCBI
RefSeq Acc Id: XR_001183679
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475615,254,044 - 15,292,643 (-)NCBI
RefSeq Acc Id: XR_001183680
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475615,231,222 - 15,292,643 (-)NCBI
RefSeq Acc Id: XR_002396021
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475615,254,044 - 15,332,549 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021116334   ⟸   XM_021260675
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021116332   ⟸   XM_021260673
- Peptide Label: isoform X5
- UniProtKB: A0A0P6JD22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116330   ⟸   XM_021260671
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JD22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116331   ⟸   XM_021260672
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012928704   ⟸   XM_013073250
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004847763   ⟸   XM_004847706
- Peptide Label: isoform X1
- UniProtKB: G5BN64 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000025830   ⟸   ENSHGLT00000026059


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018384 Ensembl, ENTREZGENE
  ENSHGLG00000041562 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000026059 ENTREZGENE
  ENSHGLT00000041537 UniProtKB/TrEMBL
InterPro Glyco_trans_14 UniProtKB/TrEMBL
KEGG Report hgl:101702179 UniProtKB/TrEMBL
NCBI Gene Gcnt2 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE 14 FAMILY MEMBER UniProtKB/TrEMBL
  N-ACETYLLACTOSAMINIDE BETA-1,6-N-ACETYLGLUCOSAMINYL-TRANSFERASE UniProtKB/TrEMBL
  N-ACETYLLACTOSAMINIDE BETA-1,6-N-ACETYLGLUCOSAMINYL-TRANSFERASE UniProtKB/TrEMBL
Pfam Branch UniProtKB/TrEMBL
UniProt A0A0P6JD22 ENTREZGENE, UniProtKB/TrEMBL
  G5BN64 ENTREZGENE, UniProtKB/TrEMBL