Washc5 (WASH complex subunit 5) - Rat Genome Database

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Gene: Washc5 (WASH complex subunit 5) Heterocephalus glaber
Analyze
Symbol: Washc5
Name: WASH complex subunit 5
RGD ID: 18921893
Description: ENCODES a protein that exhibits rRNA binding (inferred); INVOLVED IN lysosome organization (ortholog); meiotic spindle assembly (ortholog); oocyte maturation (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia (ortholog); hereditary spastic paraplegia 10 (ortholog); FOUND IN early endosome (ortholog); neuronal cell body (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kiaa0196; WASH complex subunit strumpellin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473530,166,623 - 30,223,404 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473530,166,617 - 30,223,404 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Washc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473530,166,623 - 30,223,404 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473530,166,617 - 30,223,404 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
WASHC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388125,024,260 - 125,091,792 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8125,024,260 - 125,091,819 (-)EnsemblGRCh38hg38GRCh38
GRCh378126,036,502 - 126,104,034 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368126,105,684 - 126,173,243 (-)NCBINCBI36Build 36hg18NCBI36
Celera8122,225,172 - 122,293,224 (-)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8121,360,288 - 121,427,855 (-)NCBIHuRef
CHM1_18126,077,126 - 126,144,676 (-)NCBICHM1_1
T2T-CHM13v2.08126,158,081 - 126,225,631 (-)NCBIT2T-CHM13v2.0
Washc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391559,203,712 - 59,246,043 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1559,203,846 - 59,246,016 (-)EnsemblGRCm39 Ensembl
GRCm381559,331,863 - 59,374,194 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1559,331,997 - 59,374,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv371559,163,552 - 59,205,707 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361559,161,678 - 59,203,833 (-)NCBIMGSCv36mm8
Celera1560,862,638 - 60,905,171 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1525.17NCBI
Washc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8792,773,625 - 92,825,532 (-)NCBIGRCr8
mRatBN7.2790,884,192 - 90,936,096 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl790,884,197 - 90,936,103 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx792,774,029 - 92,825,985 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0794,975,207 - 95,027,170 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0794,802,520 - 94,854,454 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0799,625,379 - 99,677,237 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl799,625,619 - 99,677,268 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07100,212,544 - 100,263,519 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4796,112,349 - 96,169,399 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera787,646,862 - 87,697,773 (-)NCBICelera
Cytogenetic Map7q33NCBI
Washc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955461145,993 - 199,903 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955461145,993 - 199,274 (-)NCBIChiLan1.0ChiLan1.0
WASHC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27142,447,027 - 142,514,855 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18117,958,154 - 118,026,003 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08121,710,118 - 121,777,977 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18124,461,424 - 124,529,262 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8124,461,424 - 124,529,262 (-)Ensemblpanpan1.1panPan2
WASHC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11323,019,422 - 23,078,073 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1323,019,636 - 23,078,280 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1322,983,619 - 23,042,271 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01323,361,232 - 23,419,922 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1323,361,234 - 23,419,935 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11323,081,984 - 23,140,611 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01323,191,178 - 23,249,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01323,434,176 - 23,492,905 (-)NCBIUU_Cfam_GSD_1.0
Washc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530315,241,282 - 15,299,433 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647022,667,127 - 22,725,749 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647022,667,354 - 22,725,538 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WASHC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl414,598,150 - 14,668,313 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1414,598,133 - 14,667,535 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2415,149,906 - 15,246,609 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WASHC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18119,612,921 - 119,679,058 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8119,611,210 - 119,668,885 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603920,495,821 - 20,567,260 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000018584   ⟹   ENSHGLP00000018400
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473530,166,623 - 30,223,404 (+)Ensembl
RefSeq Acc Id: XM_004837968   ⟹   XP_004838025
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473530,166,617 - 30,223,404 (+)NCBI
RefSeq Acc Id: XM_021252142   ⟹   XP_021107801
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473530,166,617 - 30,221,038 (+)NCBI
RefSeq Acc Id: XM_021252144   ⟹   XP_021107803
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473530,166,617 - 30,223,404 (+)NCBI
RefSeq Acc Id: XM_021252153   ⟹   XP_021107812
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473530,175,668 - 30,223,404 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004838025 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107801 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107803 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107812 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018400
  ENSHGLP00000051572
GenBank Protein JAO00847 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004838025   ⟸   XM_004837968
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JWL5 (UniProtKB/TrEMBL),   G5AY99 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107803   ⟸   XM_021252144
- Peptide Label: isoform X3
- UniProtKB: G5AY99 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107801   ⟸   XM_021252142
- Peptide Label: isoform X2
- UniProtKB: G5AY99 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107812   ⟸   XM_021252153
- Peptide Label: isoform X4
RefSeq Acc Id: ENSHGLP00000018400   ⟸   ENSHGLT00000018584


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013191 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000018584 ENTREZGENE
  ENSHGLT00000051892 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.740 UniProtKB/TrEMBL
InterPro Ribosomal_S4e_central_region UniProtKB/TrEMBL
  Ribosomal_S4e_central_sf UniProtKB/TrEMBL
  WASH_strumpellin UniProtKB/TrEMBL
KEGG Report hgl:101708947 UniProtKB/TrEMBL
NCBI Gene Washc5 ENTREZGENE
PANTHER PTHR15691 UniProtKB/TrEMBL
  WASH COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
Pfam Ribosomal_S4e UniProtKB/TrEMBL
  Strumpellin UniProtKB/TrEMBL
UniProt A0A0P6JWL5 ENTREZGENE, UniProtKB/TrEMBL
  G5AY99 ENTREZGENE, UniProtKB/TrEMBL