Mms22l (MMS22 like, DNA repair protein) - Rat Genome Database

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Gene: Mms22l (MMS22 like, DNA repair protein) Heterocephalus glaber
Analyze
Symbol: Mms22l
Name: MMS22 like, DNA repair protein
RGD ID: 18920312
Description: ENCODES a protein that exhibits single-stranded DNA binding (ortholog); INVOLVED IN protein localization to chromatin (ortholog); FOUND IN cytosol (ortholog); FACT complex (ortholog); MCM complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein MMS22-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248108,035,864 - 8,168,555 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Mms22l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248108,035,864 - 8,168,555 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MMS22L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38697,142,161 - 97,284,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl697,142,161 - 97,283,217 (-)EnsemblGRCh38hg38GRCh38
GRCh37697,590,037 - 97,731,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36697,696,758 - 97,837,773 (-)NCBINCBI36Build 36hg18NCBI36
Celera698,233,679 - 98,375,346 (-)NCBICelera
Cytogenetic Map6q16.1NCBI
HuRef695,025,862 - 95,167,382 (-)NCBIHuRef
CHM1_1697,852,099 - 97,993,079 (-)NCBICHM1_1
T2T-CHM13v2.0698,315,584 - 98,457,957 (-)NCBIT2T-CHM13v2.0
Mms22l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39424,496,451 - 24,602,950 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl424,496,451 - 24,602,950 (+)EnsemblGRCm39 Ensembl
GRCm38424,496,451 - 24,602,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl424,496,451 - 24,602,950 (+)EnsemblGRCm38mm10GRCm38
MGSCv37424,423,609 - 24,530,097 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36424,595,792 - 24,693,579 (+)NCBIMGSCv36mm8
Celera424,232,868 - 24,339,314 (+)NCBICelera
Cytogenetic Map4A3NCBI
cM Map410.36NCBI
Mms22l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8542,994,382 - 43,110,371 (+)NCBIGRCr8
mRatBN7.2538,197,707 - 38,313,745 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl538,197,779 - 38,313,745 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx540,288,528 - 40,404,428 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0541,887,573 - 42,003,473 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0541,820,871 - 41,936,780 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0538,844,502 - 38,960,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl538,844,488 - 38,961,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0543,473,579 - 43,590,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4539,528,968 - 39,645,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1539,529,547 - 39,645,295 (+)NCBI
Celera537,133,558 - 37,249,635 (+)NCBICelera
Cytogenetic Map5q21NCBI
Mms22l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541123,125,121 - 23,245,950 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541123,125,203 - 23,245,941 (-)NCBIChiLan1.0ChiLan1.0
MMS22L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25117,181,663 - 117,332,914 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16115,059,841 - 115,211,068 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0694,989,906 - 95,127,260 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1698,873,354 - 99,011,421 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl698,861,299 - 99,011,773 (-)Ensemblpanpan1.1panPan2
MMS22L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11255,584,884 - 55,713,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1255,588,888 - 55,713,341 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1255,404,529 - 55,533,735 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01256,400,771 - 56,530,067 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1256,400,779 - 56,530,011 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11255,737,270 - 55,866,290 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01255,598,005 - 55,727,110 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01255,845,599 - 55,974,832 (-)NCBIUU_Cfam_GSD_1.0
Mms22l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494690,119,302 - 90,241,514 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936699486,491 - 608,562 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936699486,510 - 608,532 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMS22L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl164,306,073 - 64,459,904 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1164,306,078 - 64,459,956 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2172,728,444 - 72,948,597 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMS22L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11376,611,574 - 76,750,893 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1376,611,517 - 76,750,616 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604048,920,825 - 49,061,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004862496   ⟹   XP_004862553
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248108,035,864 - 8,168,555 (+)NCBI
RefSeq Acc Id: XM_021242699   ⟹   XP_021098358
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248108,035,864 - 8,166,299 (+)NCBI
RefSeq Acc Id: XM_021242700   ⟹   XP_021098359
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248108,036,032 - 8,166,301 (+)NCBI
RefSeq Acc Id: XM_021242701   ⟹   XP_021098360
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248108,035,864 - 8,166,298 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004862553 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098358 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098359 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098360 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10222 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000054646
GenBank Protein JAO00909 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004862553   ⟸   XM_004862496
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JB16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098358   ⟸   XM_021242699
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JB16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098360   ⟸   XM_021242701
- Peptide Label: isoform X3
- UniProtKB: A0A0P6JB16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098359   ⟸   XM_021242700
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JB16 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000469 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000046850 UniProtKB/TrEMBL
InterPro MMS22-like UniProtKB/TrEMBL
  MMS22L_C UniProtKB/TrEMBL
  MMS22L_N UniProtKB/TrEMBL
NCBI Gene Mms22l ENTREZGENE
PANTHER PROTEIN MMS22-LIKE UniProtKB/TrEMBL
  PTHR28547 UniProtKB/TrEMBL
Pfam MMS22L_C UniProtKB/TrEMBL
  MMS22L_N UniProtKB/TrEMBL
UniProt A0A0P6JB16 ENTREZGENE, UniProtKB/TrEMBL