Mterf3 (mitochondrial transcription termination factor 3) - Rat Genome Database

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Gene: Mterf3 (mitochondrial transcription termination factor 3) Heterocephalus glaber
Analyze
Symbol: Mterf3 (Ensembl: MTERFD1)
Name: mitochondrial transcription termination factor 3
RGD ID: 18920194
Description: ENCODES a protein that exhibits transcription cis-regulatory region binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH genetic disease (ortholog); Klippel-Feil syndrome 1 (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MTERF domain containing 1; mTERF domain-containing protein 1, mitochondrial; Mterfd1; transcription termination factor 3, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247633,556,483 - 3,587,318 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247633,558,707 - 3,587,546 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mterf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247633,556,483 - 3,587,318 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247633,558,707 - 3,587,546 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MTERF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38896,239,398 - 96,261,613 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl896,239,398 - 96,261,610 (-)EnsemblGRCh38hg38GRCh38
GRCh37897,251,626 - 97,273,841 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36897,320,821 - 97,342,972 (-)NCBINCBI36Build 36hg18NCBI36
Celera893,437,637 - 93,459,789 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef892,457,196 - 92,479,318 (-)NCBIHuRef
CHM1_1897,291,884 - 97,314,036 (-)NCBICHM1_1
T2T-CHM13v2.0897,364,733 - 97,387,331 (-)NCBIT2T-CHM13v2.0
Mterf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391367,053,520 - 67,081,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1367,055,032 - 67,081,152 (-)EnsemblGRCm39 Ensembl
GRCm381366,906,577 - 66,933,083 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1366,906,968 - 66,933,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv371367,013,031 - 67,034,008 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361367,347,875 - 67,368,816 (-)NCBIMGSCv36mm8
Celera1370,371,705 - 70,392,691 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.54NCBI
Mterf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,711,654 - 65,729,926 (-)NCBIGRCr8
mRatBN7.2763,826,418 - 63,844,747 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,826,427 - 63,844,658 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,715,625 - 65,733,862 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,917,913 - 67,936,045 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,710,575 - 67,728,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0771,275,544 - 71,293,842 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl771,273,275 - 71,293,823 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,447,410 - 71,465,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,969,806 - 67,988,047 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,990,538 - 68,008,777 (-)NCBI
Celera760,959,013 - 60,977,102 (-)NCBICelera
Cytogenetic Map7q22NCBI
Mterf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541712,235,490 - 12,269,261 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541712,232,897 - 12,268,572 (-)NCBIChiLan1.0ChiLan1.0
MTERF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27113,571,849 - 113,594,083 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1889,110,771 - 89,132,986 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0892,864,512 - 92,886,757 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1895,062,088 - 95,084,035 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl895,062,088 - 95,084,035 (-)Ensemblpanpan1.1panPan2
MTERF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12940,750,863 - 40,772,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2940,750,909 - 40,768,956 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2940,750,909 - 40,768,956 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.02940,942,583 - 40,963,883 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2940,940,419 - 40,960,049 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12940,985,409 - 41,006,682 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02940,954,494 - 40,975,700 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02941,417,269 - 41,438,499 (-)NCBIUU_Cfam_GSD_1.0
Mterf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530338,849,499 - 38,870,372 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647046,275,587 - 46,296,456 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647046,275,587 - 46,296,456 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTERF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl440,376,187 - 40,399,609 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1440,376,146 - 40,399,614 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2443,554,874 - 43,578,509 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTERF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1891,203,095 - 91,223,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl891,203,169 - 91,223,512 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603949,560,948 - 49,584,538 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019145   ⟹   ENSHGLP00000018956
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247633,556,483 - 3,587,318 (-)Ensembl
RefSeq Acc Id: XM_004850141   ⟹   XP_004850198
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247633,558,707 - 3,587,546 (-)NCBI
RefSeq Acc Id: XM_004850142   ⟹   XP_004850199
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247633,558,707 - 3,587,544 (-)NCBI
RefSeq Acc Id: XM_021262670   ⟹   XP_021118329
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247633,558,707 - 3,587,318 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004850198 (Get FASTA)   NCBI Sequence Viewer  
  XP_004850199 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118329 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05734 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018956
  ENSHGLP00100056921
GenBank Protein JAO00869 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004850198   ⟸   XM_004850141
- Peptide Label: isoform X1
- UniProtKB: G5B8X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850199   ⟸   XM_004850142
- Peptide Label: isoform X1
- UniProtKB: G5B8X3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118329   ⟸   XM_021262670
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000018956   ⟸   ENSHGLT00000019145


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013588 Ensembl, ENTREZGENE
  ENSHGLG00100018033 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000019145 ENTREZGENE
  ENSHGLT00100059255 UniProtKB/TrEMBL
Gene3D-CATH 1.25.70.10 UniProtKB/TrEMBL
InterPro MTERF UniProtKB/TrEMBL
  MTERF_sf UniProtKB/TrEMBL
KEGG Report hgl:101707951 UniProtKB/TrEMBL
NCBI Gene Mterf3 ENTREZGENE
PANTHER PTHR13068 UniProtKB/TrEMBL
  TRANSCRIPTION TERMINATION FACTOR 3, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam mTERF UniProtKB/TrEMBL
SMART Mterf UniProtKB/TrEMBL
UniProt G5B8X3 ENTREZGENE, UniProtKB/TrEMBL