Snx18 (sorting nexin 18) - Rat Genome Database

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Gene: Snx18 (sorting nexin 18) Heterocephalus glaber
Analyze
Symbol: Snx18
Name: sorting nexin 18
RGD ID: 18919919
Description: ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN cleavage furrow formation (ortholog); endocytosis (ortholog); endosomal transport (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasmic side of plasma membrane (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-18
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247594,850,555 - 4,879,478 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247594,851,014 - 4,879,365 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snx18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247594,850,555 - 4,879,478 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247594,851,014 - 4,879,365 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNX18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38554,517,759 - 54,648,005 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl554,517,759 - 54,546,586 (+)EnsemblGRCh38hg38GRCh38
GRCh37553,813,589 - 53,842,416 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36553,849,350 - 53,878,173 (+)NCBINCBI36Build 36hg18NCBI36
Build 34553,849,539 - 53,851,426NCBI
Celera550,767,064 - 50,795,890 (+)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef550,787,437 - 50,816,259 (+)NCBIHuRef
CHM1_1553,816,580 - 53,845,409 (+)NCBICHM1_1
T2T-CHM13v2.0555,345,475 - 55,475,784 (+)NCBIT2T-CHM13v2.0
Snx18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,728,715 - 113,755,100 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,728,715 - 113,755,100 (-)EnsemblGRCm39 Ensembl
GRCm3813113,592,179 - 113,618,564 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13113,592,179 - 113,618,564 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713114,382,387 - 114,408,772 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,713,061 - 114,739,419 (-)NCBIMGSCv36mm8
Celera13117,901,784 - 117,928,168 (-)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1364.0NCBI
Snx18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8246,965,498 - 46,991,516 (-)NCBIGRCr8
mRatBN7.2245,232,325 - 45,258,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl245,232,325 - 45,258,345 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx252,343,993 - 52,369,979 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0250,402,361 - 50,428,348 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0245,274,943 - 45,301,291 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0245,454,782 - 45,480,798 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl245,454,782 - 45,480,798 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0264,486,855 - 64,512,619 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4245,014,383 - 45,040,586 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1244,943,876 - 45,006,230 (-)NCBI
Celera241,000,711 - 41,026,746 (-)NCBICelera
Cytogenetic Map2q14NCBI
Snx18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544613,043,821 - 13,067,933 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544613,043,821 - 13,067,933 (-)NCBIChiLan1.0ChiLan1.0
SNX18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2459,181,347 - 59,419,695 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1557,334,972 - 57,573,292 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0559,270,053 - 59,508,359 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1561,101,061 - 61,129,397 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl561,101,056 - 61,129,397 (-)Ensemblpanpan1.1panPan2
SNX18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1460,803,245 - 60,945,317 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl460,835,783 - 60,945,828 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha460,569,927 - 60,710,959 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0461,295,275 - 61,436,640 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl461,302,014 - 61,436,904 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1461,185,900 - 61,215,498 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0461,201,579 - 61,342,650 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0461,720,198 - 61,861,418 (-)NCBIUU_Cfam_GSD_1.0
Snx18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213204,025,143 - 204,201,070 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648013,108,510 - 13,137,550 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1633,776,746 - 33,847,624 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11633,776,964 - 33,801,391 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21635,846,933 - 35,859,015 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1450,782,842 - 50,810,220 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl450,782,929 - 50,811,253 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666082261,616 - 288,960 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000004867   ⟹   ENSHGLP00000004803
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247594,850,555 - 4,879,478 (-)Ensembl
RefSeq Acc Id: XM_004848524   ⟹   XP_004848581
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247594,851,014 - 4,879,365 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004848581 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004803
Reference Protein Sequences
RefSeq Acc Id: XP_004848581   ⟸   XM_004848524
RefSeq Acc Id: ENSHGLP00000004803   ⟸   ENSHGLT00000004867


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003526 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000004867 ENTREZGENE
NCBI Gene Snx18 ENTREZGENE