LOC101701161 (NADH-cytochrome b5 reductase-like) - Rat Genome Database

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Gene: LOC101701161 (NADH-cytochrome b5 reductase-like) Heterocephalus glaber
Analyze
Symbol: LOC101701161 (Ensembl: CYB5RL)
Name: NADH-cytochrome b5 reductase-like
RGD ID: 18919498
Description: ENCODES a protein that exhibits cytochrome-b5 reductase activity, acting on NAD(P)H (inferred); oxidoreductase activity (inferred); INVOLVED IN ergosterol biosynthetic process (inferred); FOUND IN nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CYB5RL; NADH-cytochrome b5 reductase-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624934334,094 - 350,665 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624934332,575 - 354,337 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101701161
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624934334,094 - 350,665 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624934332,575 - 354,337 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CYB5RL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38154,169,651 - 54,200,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl154,169,651 - 54,200,036 (-)EnsemblGRCh38hg38GRCh38
GRCh37154,635,324 - 54,665,703 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36154,410,597 - 54,438,334 (-)NCBINCBI36Build 36hg18NCBI36
Celera152,925,647 - 52,953,373 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef152,753,337 - 52,781,148 (-)NCBIHuRef
CHM1_1154,754,651 - 54,782,349 (-)NCBICHM1_1
T2T-CHM13v2.0154,052,528 - 54,082,904 (-)NCBIT2T-CHM13v2.0
Cyb5rl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394106,924,035 - 106,945,204 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4106,924,185 - 106,945,465 (+)EnsemblGRCm39 Ensembl
GRCm384107,066,830 - 107,088,007 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4107,066,988 - 107,088,268 (+)EnsemblGRCm38mm10GRCm38
MGSCv374106,742,773 - 106,757,410 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364106,568,100 - 106,582,737 (+)NCBIMGSCv36mm8
Celera4105,430,906 - 105,445,513 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map449.99NCBI
Cyb5rl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85127,075,034 - 127,097,551 (+)NCBIGRCr8
mRatBN7.25121,846,223 - 121,868,287 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5121,847,952 - 121,868,745 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05126,666,934 - 126,683,069 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5126,668,689 - 126,683,179 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05130,517,733 - 130,540,172 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45128,146,100 - 128,161,913 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5120,593,641 - 120,609,431 (+)NCBICelera
Cytogenetic Map5q34NCBI
LOC102003847
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554645,067,704 - 5,088,395 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554645,065,935 - 5,087,968 (+)NCBIChiLan1.0ChiLan1.0
LOC100977118
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21172,634,234 - 172,670,825 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11171,775,030 - 171,803,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0153,442,480 - 53,476,136 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1155,042,138 - 55,069,550 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl155,042,138 - 55,065,899 (-)Ensemblpanpan1.1panPan2
CYB5RL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1554,843,554 - 54,862,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl554,843,143 - 54,865,462 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha554,910,353 - 54,930,091 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0555,031,541 - 55,051,280 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl555,031,135 - 55,050,896 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1555,026,281 - 55,046,016 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0554,915,584 - 54,935,324 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0555,305,293 - 55,325,034 (+)NCBIUU_Cfam_GSD_1.0
LOC101959426
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,409,986 - 68,433,937 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365226,982,396 - 7,006,406 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365226,982,427 - 7,006,308 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYB5RL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6158,143,626 - 158,168,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16158,143,597 - 158,168,509 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26146,028,239 - 146,037,292 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CYB5RL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12078,735,652 - 78,763,146 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2078,746,654 - 78,767,640 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603338,520,948 - 38,550,694 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002156   ⟹   ENSHGLP00000002108
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624934334,094 - 350,665 (+)Ensembl
RefSeq Acc Id: XM_004874640   ⟹   XP_004874697
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934332,576 - 354,337 (+)NCBI
RefSeq Acc Id: XM_021252074   ⟹   XP_021107733
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934333,292 - 354,337 (+)NCBI
RefSeq Acc Id: XR_002392077
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624934332,575 - 350,543 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004874697 (Get FASTA)   NCBI Sequence Viewer  
  XP_021107733 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB18231 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002108
  ENSHGLP00100016770
GenBank Protein JAO02202 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004874697   ⟸   XM_004874640
- UniProtKB: G5C9M0 (UniProtKB/TrEMBL),   A0A0P6JCT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021107733   ⟸   XM_021252074
- UniProtKB: G5C9M0 (UniProtKB/TrEMBL),   A0A0P6JCT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002108   ⟸   ENSHGLT00000002156


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001600 Ensembl, ENTREZGENE
  ENSHGLG00100012376 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002156 ENTREZGENE
  ENSHGLT00100016950 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.80 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro CBR-like UniProtKB/TrEMBL
  Cbr1-like_FAD-bd_dom UniProtKB/TrEMBL
  FAD-bd_FR_type UniProtKB/TrEMBL
  Flavoprot_Pyr_Nucl_cyt_Rdtase UniProtKB/TrEMBL
  FNR_nucleotide-bd UniProtKB/TrEMBL
  Oxidoreductase-like_N UniProtKB/TrEMBL
  OxRdtase_FAD/NAD-bd UniProtKB/TrEMBL
  Riboflavin_synthase-like_b-brl UniProtKB/TrEMBL
KEGG Report hgl:101701161 UniProtKB/TrEMBL
NCBI Gene LOC101701161 ENTREZGENE
PANTHER NADH-CYTOCHROME B5 REDUCTASE-LIKE UniProtKB/TrEMBL
  PTHR19370 UniProtKB/TrEMBL
Pfam FAD_binding_6 UniProtKB/TrEMBL
  NAD_binding_1 UniProtKB/TrEMBL
  Oxidored-like UniProtKB/TrEMBL
PRINTS CYTB5RDTASE UniProtKB/TrEMBL
  FPNCR UniProtKB/TrEMBL
PROSITE FAD_FR UniProtKB/TrEMBL
Superfamily-SCOP SSF52343 UniProtKB/TrEMBL
  SSF63380 UniProtKB/TrEMBL
UniProt A0A0P6JCT8 ENTREZGENE, UniProtKB/TrEMBL
  G5C9M0 ENTREZGENE, UniProtKB/TrEMBL