Pltp (phospholipid transfer protein) - Rat Genome Database

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Gene: Pltp (phospholipid transfer protein) Heterocephalus glaber
Analyze
Symbol: Pltp
Name: phospholipid transfer protein
RGD ID: 18919454
Description: ENCODES a protein that exhibits ceramide binding (inferred); ceramide transfer activity (inferred); cerebroside transfer activity (inferred); INVOLVED IN flagellated sperm motility (ortholog); positive regulation of high-density lipoprotein particle assembly (ortholog); vitamin E biosynthetic process (ortholog); PARTICIPATES IN reverse cholesterol transport pathway; ASSOCIATED WITH atherosclerosis (ortholog); Coronary Disease (ortholog); dry eye syndrome (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred); high-density lipoprotein particle (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,673,089 - 8,685,942 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247908,673,212 - 8,686,094 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pltp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,673,089 - 8,685,942 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247908,673,212 - 8,686,094 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PLTP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,898,620 - 45,912,155 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,898,621 - 45,912,155 (-)EnsemblGRCh38hg38GRCh38
GRCh372044,527,259 - 44,540,794 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,960,804 - 43,974,193 (-)NCBINCBI36Build 36hg18NCBI36
Build 342043,960,803 - 43,974,193NCBI
Celera2041,238,859 - 41,252,245 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,269,236 - 41,282,979 (-)NCBIHuRef
CHM1_12044,430,379 - 44,443,688 (-)NCBICHM1_1
T2T-CHM13v2.02047,635,115 - 47,648,212 (-)NCBIT2T-CHM13v2.0
Pltp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,681,441 - 164,699,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,681,438 - 164,699,631 (-)EnsemblGRCm39 Ensembl
GRCm382164,839,518 - 164,857,708 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,839,518 - 164,857,711 (-)EnsemblGRCm38mm10GRCm38
MGSCv372164,665,018 - 164,683,208 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362164,530,723 - 164,548,913 (-)NCBIMGSCv36mm8
Celera2170,777,180 - 170,795,346 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.27NCBI
Pltp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,994,162 - 174,011,982 (-)NCBIGRCr8
mRatBN7.23153,574,825 - 153,592,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,574,825 - 153,592,647 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,383,266 - 157,401,093 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,882,236 - 165,900,067 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,626,011 - 163,643,842 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,304,469 - 161,322,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,304,469 - 161,322,289 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,489,818 - 167,507,696 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,871,842 - 155,889,959 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,777,877 - 155,796,306 (-)NCBI
Celera3152,186,695 - 152,199,110 (-)NCBICelera
Cytogenetic Map3q42NCBI
Pltp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,384,723 - 11,399,217 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544511,384,723 - 11,399,217 (+)NCBIChiLan1.0ChiLan1.0
PLTP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,640,109 - 51,653,712 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,633,217 - 51,646,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,237,434 - 42,251,189 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,324,608 - 43,337,999 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,324,609 - 43,337,999 (-)Ensemblpanpan1.1panPan2
PLTP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,189,098 - 33,199,935 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,189,099 - 33,199,854 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,716,116 - 32,727,034 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,899,412 - 33,910,331 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,899,419 - 33,910,247 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,157,883 - 33,168,800 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,273,014 - 33,283,934 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,812,190 - 33,823,120 (-)NCBIUU_Cfam_GSD_1.0
Pltp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,667,291 - 191,677,832 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365147,121,023 - 7,131,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLTP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,089,785 - 48,101,515 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,089,789 - 48,101,604 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,829,332 - 53,847,099 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLTP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,972,054 - 17,986,100 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl217,972,215 - 17,988,701 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605066,611,503 - 66,625,773 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010024   ⟹   ENSHGLP00000009915
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247908,673,089 - 8,685,942 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000010025   ⟹   ENSHGLP00000009916
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247908,673,089 - 8,685,935 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000010026   ⟹   ENSHGLP00000009917
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247908,673,919 - 8,685,906 (+)Ensembl
RefSeq Acc Id: XM_004858135   ⟹   XP_004858192
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247908,673,216 - 8,686,094 (+)NCBI
RefSeq Acc Id: XM_021239000   ⟹   XP_021094659
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247908,673,212 - 8,686,094 (+)NCBI
RefSeq Acc Id: XM_021239001   ⟹   XP_021094660
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247908,674,350 - 8,686,094 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004858192 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094659 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094660 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009916
GenBank Protein JAO01772 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021094659   ⟸   XM_021239000
- Peptide Label: isoform X2
- UniProtKB: G5B7P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004858192   ⟸   XM_004858135
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JBS7 (UniProtKB/TrEMBL),   G5B7P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094660   ⟸   XM_021239001
- Peptide Label: isoform X3
- UniProtKB: G5B7P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000009916   ⟸   ENSHGLT00000010025
RefSeq Acc Id: ENSHGLP00000009917   ⟸   ENSHGLT00000010026
RefSeq Acc Id: ENSHGLP00000009915   ⟸   ENSHGLT00000010024


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007111 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010025 ENTREZGENE
InterPro Bactericidal_perm-incr_a/b_dom UniProtKB/TrEMBL
  BPI/LBP UniProtKB/TrEMBL
  BPI/LBP/Plunc UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_C UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_CS UniProtKB/TrEMBL
  Lipid-bd_serum_glycop_N UniProtKB/TrEMBL
KEGG Report hgl:101721295 UniProtKB/TrEMBL
NCBI Gene Pltp ENTREZGENE
PANTHER PTHR10504 UniProtKB/TrEMBL
  PTHR10504:SF16 UniProtKB/TrEMBL
Pfam LBP_BPI_CETP UniProtKB/TrEMBL
  LBP_BPI_CETP_C UniProtKB/TrEMBL
PIRSF Lipid_binding_protein UniProtKB/TrEMBL
PROSITE LBP_BPI_CETP UniProtKB/TrEMBL
SMART BPI1 UniProtKB/TrEMBL
  BPI2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55394 UniProtKB/TrEMBL
UniProt A0A0P6JBS7 ENTREZGENE, UniProtKB/TrEMBL
  G5B7P8 ENTREZGENE, UniProtKB/TrEMBL