Ift22 (intraflagellar transport 22) - Rat Genome Database

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Gene: Ift22 (intraflagellar transport 22) Heterocephalus glaber
Analyze
Symbol: Ift22 (Ensembl: RABL5)
Name: intraflagellar transport 22
RGD ID: 18918874
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); INVOLVED IN intracellular protein transport (inferred); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN intraciliary transport particle B (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intraflagellar transport protein 22 homolog; RAB, member RAS oncogene family-like 5; Rab-like protein 5; Rabl5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,996,833 - 16,005,733 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474015,997,589 - 16,004,918 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Ift22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474015,996,833 - 16,005,733 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474015,997,589 - 16,004,918 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IFT22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387101,310,914 - 101,321,823 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7101,310,914 - 101,321,823 (-)EnsemblGRCh38hg38GRCh38
GRCh377100,954,195 - 100,965,104 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367100,743,369 - 100,751,750 (-)NCBINCBI36Build 36hg18NCBI36
Build 347100,550,083 - 100,558,465NCBI
Celera795,965,814 - 95,974,259 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef795,549,629 - 95,558,072 (-)NCBIHuRef
CHM1_17100,887,022 - 100,895,466 (-)NCBICHM1_1
T2T-CHM13v2.07102,634,389 - 102,645,291 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27100,315,035 - 100,323,480 (-)NCBI
Ift22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,937,004 - 136,943,363 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,937,004 - 136,944,258 (+)EnsemblGRCm39 Ensembl
GRCm385136,908,150 - 136,914,509 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,908,150 - 136,915,404 (+)EnsemblGRCm38mm10GRCm38
MGSCv375137,384,020 - 137,389,114 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365137,192,777 - 137,197,871 (+)NCBIMGSCv36mm8
Celera5133,924,466 - 133,929,603 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.03NCBI
Ift22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,397,092 - 25,405,522 (-)NCBIGRCr8
mRatBN7.21219,759,072 - 19,768,859 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,761,790 - 19,768,809 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1220,901,165 - 20,908,036 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,513,874 - 21,520,741 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,578,973 - 20,585,832 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,804,384 - 22,811,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,803,855 - 22,811,058 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,813,504 - 24,820,156 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41220,761,351 - 20,768,004 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11220,750,962 - 20,757,613 (+)NCBI
Celera1221,537,434 - 21,544,034 (-)NCBICelera
Cytogenetic Map12q12NCBI
Ift22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545615,979,987 - 15,986,506 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545615,980,412 - 15,987,573 (+)NCBIChiLan1.0ChiLan1.0
IFT22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26119,328,047 - 119,335,499 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17167,592,678 - 167,599,948 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0793,452,017 - 93,462,508 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17106,693,852 - 106,701,668 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,693,729 - 106,701,668 (-)Ensemblpanpan1.1panPan2
IFT22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.168,578,374 - 8,602,659 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl68,578,301 - 8,593,606 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,275,646 - 10,291,057 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.068,397,794 - 8,413,207 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl68,396,822 - 8,413,028 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.168,353,842 - 8,369,039 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.068,328,415 - 8,343,824 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.068,493,614 - 8,508,828 (+)NCBIUU_Cfam_GSD_1.0
Ift22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,869,985 - 132,875,471 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,159,199 - 1,166,679 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,161,457 - 1,166,529 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,976,306 - 8,981,510 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,977,497 - 8,981,635 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.238,491,987 - 8,495,934 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFT22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12811,858,040 - 11,864,793 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2811,858,065 - 11,865,635 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660704,489,614 - 4,496,866 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000025190   ⟹   ENSHGLP00000024968
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474015,996,833 - 16,005,733 (+)Ensembl
RefSeq Acc Id: XM_004840138   ⟹   XP_004840195
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474015,997,589 - 16,004,918 (+)NCBI
RefSeq Acc Id: XM_004840139   ⟹   XP_004840196
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474015,997,589 - 16,004,918 (+)NCBI
RefSeq Acc Id: XM_004840140   ⟹   XP_004840197
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474015,997,605 - 16,004,918 (+)NCBI
RefSeq Acc Id: XM_004840141   ⟹   XP_004840198
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474015,997,589 - 16,004,918 (+)NCBI
RefSeq Acc Id: XM_021254473   ⟹   XP_021110132
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474015,997,589 - 16,004,918 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004840198   ⟸   XM_004840141
- Peptide Label: isoform X1
- UniProtKB: G5AXB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004840195   ⟸   XM_004840138
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021110132   ⟸   XM_021254473
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004840196   ⟸   XM_004840139
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004840197   ⟸   XM_004840140
- Peptide Label: isoform X4
RefSeq Acc Id: ENSHGLP00000024968   ⟸   ENSHGLT00000025190


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017792 Ensembl, ENTREZGENE
  ENSHGLG00000033627 UniProtKB/TrEMBL
  ENSHGLG00100040368 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000025190 ENTREZGENE
  ENSHGLT00000090555 UniProtKB/TrEMBL
  ENSHGLT00100054122 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Ift22 ENTREZGENE
PANTHER DRAB5-RELATED UniProtKB/TrEMBL
  INTRAFLAGELLAR TRANSPORT PROTEIN 22 HOMOLOG UniProtKB/TrEMBL
Pfam Roc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt G5AXB6 ENTREZGENE, UniProtKB/TrEMBL