Tmem220 (transmembrane protein 220) - Rat Genome Database

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Gene: Tmem220 (transmembrane protein 220) Heterocephalus glaber
Analyze
Symbol: Tmem220
Name: transmembrane protein 220
RGD ID: 18918407
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478613,071,790 - 13,085,667 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478613,071,316 - 13,085,721 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Tmem220
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478613,071,790 - 13,085,667 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478613,071,316 - 13,085,721 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMEM220
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381710,711,133 - 10,730,023 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1710,699,015 - 10,730,023 (-)EnsemblGRCh38hg38GRCh38
GRCh371710,614,450 - 10,633,340 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361710,557,364 - 10,574,371 (-)NCBINCBI36Build 36hg18NCBI36
Celera1710,647,493 - 10,664,502 (-)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef1710,516,685 - 10,533,692 (-)NCBIHuRef
CHM1_11710,626,849 - 10,643,856 (-)NCBICHM1_1
T2T-CHM13v2.01710,618,686 - 10,637,574 (-)NCBIT2T-CHM13v2.0
Tmem220
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,915,959 - 66,927,818 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,915,980 - 66,926,138 (+)EnsemblGRCm39 Ensembl
GRCm381167,025,154 - 67,035,312 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1167,025,154 - 67,035,312 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,838,656 - 66,848,292 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,841,349 - 66,850,985 (+)NCBIMGSCv36mm8
Celera1173,964,497 - 73,974,141 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.59NCBI
Tmem220
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81052,218,782 - 52,229,302 (+)NCBIGRCr8
mRatBN7.21051,719,777 - 51,728,792 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1051,719,777 - 51,728,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1056,375,727 - 56,384,855 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01055,865,699 - 55,874,827 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01051,376,076 - 51,385,213 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01053,570,980 - 53,579,994 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1053,570,989 - 53,579,321 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01053,321,978 - 53,331,027 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41053,726,472 - 53,735,025 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11053,687,155 - 53,748,648 (+)NCBI
Celera1050,902,896 - 50,911,906 (+)NCBICelera
Cytogenetic Map10q24NCBI
Tmem220
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554676,487,925 - 6,503,178 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554676,487,936 - 6,503,178 (+)NCBIChiLan1.0ChiLan1.0
TMEM220
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1534,984,756 - 34,995,778 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl534,985,492 - 34,995,784 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha535,121,586 - 35,133,099 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,090,047 - 35,101,561 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1535,055,508 - 35,067,016 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0535,012,417 - 35,023,930 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,193,771 - 35,205,311 (-)NCBIUU_Cfam_GSD_1.0
Tmem220
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,077,192 - 50,092,897 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365953,550,467 - 3,567,091 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365953,552,393 - 3,567,085 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM220
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1255,438,198 - 55,454,590 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11255,438,199 - 55,454,912 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21258,068,670 - 58,085,026 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM220
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11610,054,725 - 10,072,168 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605911,272,641 - 11,289,948 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014896   ⟹   ENSHGLP00000014751
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478613,071,790 - 13,085,667 (-)Ensembl
RefSeq Acc Id: XM_013076806   ⟹   XP_012932260
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478613,071,316 - 13,085,721 (-)NCBI
RefSeq Acc Id: XM_013076807   ⟹   XP_012932261
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478613,071,316 - 13,085,685 (-)NCBI
RefSeq Acc Id: XM_021238487   ⟹   XP_021094146
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478613,071,316 - 13,080,552 (-)NCBI
RefSeq Acc Id: XM_021238488   ⟹   XP_021094147
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478613,071,316 - 13,085,721 (-)NCBI
RefSeq Acc Id: XM_021238489   ⟹   XP_021094148
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478613,077,007 - 13,085,721 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021094147   ⟸   XM_021238488
- Peptide Label: isoform X3
- UniProtKB: G5B5I8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012932260   ⟸   XM_013076806
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012932261   ⟸   XM_013076807
- Peptide Label: isoform X4
- UniProtKB: G5B5I8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094146   ⟸   XM_021238487
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J8J9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094148   ⟸   XM_021238489
- Peptide Label: isoform X5
RefSeq Acc Id: ENSHGLP00000014751   ⟸   ENSHGLT00000014896


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010543 Ensembl, ENTREZGENE
  ENSHGLG00000037715 UniProtKB/TrEMBL
  ENSHGLG00100045796 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000014896 ENTREZGENE
  ENSHGLT00000075292 UniProtKB/TrEMBL
  ENSHGLT00100089694 UniProtKB/TrEMBL
InterPro TMEM220 UniProtKB/TrEMBL
NCBI Gene Tmem220 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 220 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 220 UniProtKB/TrEMBL
Pfam TMEM220 UniProtKB/TrEMBL
UniProt A0A0P6J8J9 ENTREZGENE, UniProtKB/TrEMBL
  G5B5I8 ENTREZGENE, UniProtKB/TrEMBL