CUNH17orf100 (chromosome unknown C17orf100 homolog) - Rat Genome Database

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Gene: CUNH17orf100 (chromosome unknown C17orf100 homolog) Heterocephalus glaber
Analyze
Symbol: CUNH17orf100
Name: chromosome unknown C17orf100 homolog
RGD ID: 18918084
Description: ASSOCIATED WITH congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); Leber congenital amaurosis 4 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C17orf100 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247867,380,691 - 7,388,513 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
CUNH17orf100
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247867,380,691 - 7,388,513 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
C17orf100
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,651,762 - 6,653,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,651,762 - 6,693,202 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,555,082 - 6,556,795 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,495,783 - 6,497,341 (+)NCBINCBI36Build 36hg18NCBI36
Celera176,576,124 - 6,577,683 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef176,450,343 - 6,451,907 (+)NCBIHuRef
CHM1_1176,565,345 - 6,566,909 (+)NCBICHM1_1
T2T-CHM13v2.0176,552,391 - 6,554,105 (+)NCBIT2T-CHM13v2.0
4930563E22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391172,105,964 - 72,109,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1172,105,964 - 72,109,270 (+)EnsemblGRCm39 Ensembl
GRCm381172,215,138 - 72,218,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,215,138 - 72,218,444 (+)EnsemblGRCm38mm10GRCm38
MGSCv371172,028,640 - 72,031,952 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361172,031,333 - 72,034,645 (+)NCBIMGSCv36mm8
Celera1179,741,636 - 79,744,941 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.93NCBI
C10h17orf100
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81057,339,186 - 57,342,233 (+)NCBIGRCr8
mRatBN7.21056,840,451 - 56,843,674 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1056,832,412 - 56,843,871 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01058,784,444 - 58,787,713 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1058,784,660 - 58,785,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,525,065 - 58,528,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41059,107,710 - 59,108,313 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1055,970,332 - 55,973,601 (+)NCBICelera
Cytogenetic Map10q24NCBI
CUNH17orf100
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546712,155,309 - 12,158,762 (+)NCBIChiLan1.0ChiLan1.0
C19H17orf100
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,251,645 - 14,262,831 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,217,982 - 16,228,101 (+)NCBINHGRI_mPanPan1
CUNH17orf100
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,555,549 - 54,559,438 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366771,341,570 - 1,345,349 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C12H17orf100
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11250,644,783 - 50,728,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,709,611 - 52,727,624 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH17orf100
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,033,819 - 6,036,649 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605915,403,189 - 15,413,644 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004857255   ⟹   XP_004857312
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247867,380,691 - 7,388,513 (-)NCBI
RefSeq Acc Id: XM_021238192   ⟹   XP_021093851
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247867,380,691 - 7,388,513 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857312 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093851 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05771 (Get FASTA)   NCBI Sequence Viewer  
  JAO01895 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021093851   ⟸   XM_021238192
- UniProtKB: G5B910 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857312   ⟸   XM_004857255
- UniProtKB: G5B910 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
KEGG Report hgl:101703775 UniProtKB/TrEMBL
NCBI Gene CUNH17orf100 ENTREZGENE
UniProt G5B910 ENTREZGENE, UniProtKB/TrEMBL