Pou3f3 (POU class 3 homeobox 3) - Rat Genome Database

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Gene: Pou3f3 (POU class 3 homeobox 3) Heterocephalus glaber
Analyze
Symbol: Pou3f3
Name: POU class 3 homeobox 3
RGD ID: 18916984
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cerebral cortex radially oriented cell migration (ortholog); chemical homeostasis (ortholog); forebrain ventricular zone progenitor cell division (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: POU domain, class 3, transcription factor 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247499,081,906 - 9,087,318 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pou3f3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247499,081,906 - 9,087,318 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
POU3F3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382104,854,115 - 104,858,574 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2104,853,287 - 104,858,574 (+)EnsemblGRCh38hg38GRCh38
GRCh372105,470,573 - 105,475,032 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362104,838,401 - 104,839,903 (+)NCBINCBI36Build 36hg18NCBI36
Build 342104,930,486 - 104,931,989NCBI
Celera299,673,184 - 99,674,686 (+)NCBICelera
Cytogenetic Map2q12.1NCBI
HuRef299,242,289 - 99,243,259 (+)NCBIHuRef
CHM1_12105,477,314 - 105,478,580 (+)NCBICHM1_1
T2T-CHM13v2.02105,315,296 - 105,319,755 (+)NCBIT2T-CHM13v2.0
Pou3f3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39142,734,928 - 42,739,370 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl142,734,085 - 42,742,336 (+)EnsemblGRCm39 Ensembl
GRCm38142,695,768 - 42,700,210 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl142,694,925 - 42,703,176 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl142,695,768 - 42,703,176 (+)EnsemblGRCm38mm10GRCm38
MGSCv37142,753,991 - 42,757,055 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36142,641,692 - 42,643,185 (+)NCBIMGSCv36mm8
MGSCv36143,202,917 - 43,217,049 (+)NCBIMGSCv36mm8
Celera143,024,938 - 43,039,132 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map121.21NCBI
Pou3f3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8952,438,026 - 52,441,152 (+)NCBIGRCr8
mRatBN7.2944,945,872 - 44,948,998 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl944,945,872 - 44,948,992 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx953,439,603 - 53,442,731 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0958,562,401 - 58,565,529 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0956,843,728 - 56,846,854 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0949,479,148 - 49,482,246 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl949,479,023 - 49,482,252 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0949,152,036 - 49,154,632 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4941,873,891 - 41,876,408 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1941,875,036 - 41,877,823 (+)NCBI
Celera942,631,024 - 42,668,104 (+)NCBICelera
Cytogenetic Map9q22NCBI
POU3F3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21222,855,977 - 22,859,194 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A22,858,742 - 22,861,974 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A96,967,943 - 96,972,378 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A105,944,786 - 105,945,424 (+)NCBIpanpan1.1PanPan1.1panPan2
POU3F3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11038,513,872 - 38,517,692 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1038,513,013 - 38,514,684 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1038,438,997 - 38,440,556 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01039,370,326 - 39,371,885 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1039,370,371 - 39,371,870 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11039,093,811 - 39,095,370 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01039,373,547 - 39,375,105 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01039,565,321 - 39,566,880 (-)NCBIUU_Cfam_GSD_1.0
POU3F3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl349,806,161 - 49,807,666 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1349,804,112 - 49,807,730 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2352,014,447 - 52,016,847 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103241369
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1148,511,032 - 8,513,449 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041176,224,571 - 176,225,176 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004844477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01029152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_004844477   ⟹   XP_004844534
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247499,081,906 - 9,087,318 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004844534 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004844534   ⟸   XM_004844477


Additional Information

Database Acc Id Source(s)
NCBI Gene Pou3f3 ENTREZGENE