Spata22 (spermatogenesis associated 22) - Rat Genome Database

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Gene: Spata22 (spermatogenesis associated 22) Heterocephalus glaber
Analyze
Symbol: Spata22
Name: spermatogenesis associated 22
RGD ID: 18914952
Description: INVOLVED IN fertilization (ortholog); gamete generation (ortholog); homologous chromosome pairing at meiosis (ortholog); ASSOCIATED WITH autosomal dominant mutilating palmoplantar keratoderma with periorificial keratotic plaques (ortholog); Canavan disease (ortholog); focal nonepidermolytic palmoplantar keratoderma (ortholog); FOUND IN chromosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis-associated protein 22
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247866,139,452 - 6,164,535 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Spata22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247866,139,452 - 6,164,535 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPATA22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,440,019 - 3,513,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,440,019 - 3,513,852 (-)EnsemblGRCh38hg38GRCh38
GRCh37173,343,313 - 3,417,152 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,290,063 - 3,321,790 (-)NCBINCBI36Build 36hg18NCBI36
Celera173,357,027 - 3,388,867 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef173,235,800 - 3,267,078 (-)NCBIHuRef
CHM1_1173,352,921 - 3,385,561 (-)NCBICHM1_1
T2T-CHM13v2.0173,328,922 - 3,402,768 (-)NCBIT2T-CHM13v2.0
Spata22
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,217,416 - 73,237,447 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,220,567 - 73,236,870 (+)EnsemblGRCm39 Ensembl
GRCm381173,326,560 - 73,346,592 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,329,741 - 73,346,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,143,243 - 73,159,546 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,143,243 - 73,159,546 (+)NCBIMGSCv36mm8
Celera1180,866,666 - 80,882,981 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.29NCBI
Spata22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81058,443,736 - 58,461,578 (+)NCBIGRCr8
mRatBN7.21057,945,272 - 57,963,081 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1057,932,187 - 57,963,081 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1062,603,027 - 62,619,281 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01062,091,496 - 62,107,761 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01057,590,631 - 57,606,895 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01059,893,064 - 59,910,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1059,879,850 - 59,911,051 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01059,632,294 - 59,649,996 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41060,205,533 - 60,221,778 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1057,069,677 - 57,085,922 (+)NCBICelera
Cytogenetic Map10q24NCBI
Spata22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546713,306,496 - 13,325,300 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546713,304,314 - 13,325,228 (+)NCBIChiLan1.0ChiLan1.0
SPATA22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21910,711,834 - 11,123,382 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11712,678,198 - 13,089,813 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,120,296 - 3,532,343 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1173,489,143 - 3,560,652 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl173,489,143 - 3,560,654 (-)Ensemblpanpan1.1panPan2
SPATA22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,322,817 - 47,338,202 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,322,820 - 47,338,108 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,485,645 - 46,501,031 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,167,528 - 48,182,913 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,167,531 - 48,182,819 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,939,961 - 46,955,386 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,231,340 - 47,246,722 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,288,803 - 47,304,188 (-)NCBIUU_Cfam_GSD_1.0
Spata22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560255,701,702 - 55,733,760 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936677167,324 - 196,188 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936677167,324 - 197,860 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,576,835 - 49,608,237 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,573,050 - 49,609,232 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,416,337 - 51,416,682 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,952,912 - 2,977,812 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl162,952,968 - 2,975,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605918,874,897 - 18,941,652 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004857205   ⟹   XP_004857262
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247866,139,452 - 6,164,535 (-)NCBI
RefSeq Acc Id: XM_004857208   ⟹   XP_004857265
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247866,139,452 - 6,164,535 (-)NCBI
RefSeq Acc Id: XM_021238365   ⟹   XP_021094024
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247866,139,452 - 6,164,339 (-)NCBI
RefSeq Acc Id: XM_021238366   ⟹   XP_021094025
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247866,139,566 - 6,164,535 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857262 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857265 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094024 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094025 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016172
GenBank Protein JAO02590 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004857265   ⟸   XM_004857208
- Peptide Label: isoform X2
- UniProtKB: G5B940 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857262   ⟸   XM_004857205
- Peptide Label: isoform X1
- UniProtKB: A0A0N8EUP0 (UniProtKB/TrEMBL),   G5B940 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094024   ⟸   XM_021238365
- Peptide Label: isoform X1
- UniProtKB: A0A0N8EUP0 (UniProtKB/TrEMBL),   G5B940 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094025   ⟸   XM_021238366
- Peptide Label: isoform X3
- UniProtKB: G5B940 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011576 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016341 ENTREZGENE, UniProtKB/TrEMBL
InterPro Spata22 UniProtKB/TrEMBL
KEGG Report hgl:101718256 UniProtKB/TrEMBL
NCBI Gene Spata22 ENTREZGENE
PANTHER PTHR35258 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 22 UniProtKB/TrEMBL
UniProt A0A0N8EUP0 ENTREZGENE, UniProtKB/TrEMBL
  G5B940 ENTREZGENE, UniProtKB/TrEMBL