Lmo2 (LIM domain only 2) - Rat Genome Database

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Gene: Lmo2 (LIM domain only 2) Heterocephalus glaber
Analyze
Symbol: Lmo2
Name: LIM domain only 2
RGD ID: 18913971
Description: ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); chromatin binding (ortholog); DNA binding (ortholog); INVOLVED IN embryonic hemopoiesis (ortholog); negative regulation of erythrocyte differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN nucleus (ortholog); protein-containing complex (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Rhombotin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476713,245,984 - 13,257,440 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476713,245,783 - 13,257,322 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Lmo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476713,245,984 - 13,257,440 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476713,245,783 - 13,257,322 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LMO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381133,858,576 - 33,892,076 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1133,858,576 - 33,892,076 (-)EnsemblGRCh38hg38GRCh38
GRCh371133,880,122 - 33,913,623 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361133,836,698 - 33,870,412 (-)NCBINCBI36Build 36hg18NCBI36
Build 341133,836,700 - 33,870,412NCBI
Celera1134,027,627 - 34,061,421 (-)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1133,576,315 - 33,610,063 (-)NCBIHuRef
CHM1_11133,879,643 - 33,913,368 (-)NCBICHM1_1
T2T-CHM13v2.01133,995,616 - 34,029,225 (-)NCBIT2T-CHM13v2.0
Lmo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,788,309 - 103,812,223 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2103,788,331 - 103,812,223 (+)EnsemblGRCm39 Ensembl
GRCm382103,957,903 - 103,981,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2103,957,986 - 103,981,878 (+)EnsemblGRCm38mm10GRCm38
MGSCv372103,798,152 - 103,822,035 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362103,771,062 - 103,782,713 (+)NCBIMGSCv36mm8
Celera2105,204,167 - 105,227,999 (+)NCBICelera
Cytogenetic Map2E2NCBI
cM Map254.46NCBI
Lmo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83110,810,162 - 110,832,895 (+)NCBIGRCr8
mRatBN7.2390,355,234 - 90,377,970 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,365,883 - 90,377,953 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,848,260 - 93,870,995 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03102,447,339 - 102,470,072 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03100,277,857 - 100,300,590 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0393,909,156 - 93,931,888 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,909,156 - 93,931,871 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03100,549,307 - 100,572,039 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4389,356,199 - 89,367,641 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1389,252,944 - 89,263,314 (+)NCBI
Celera389,416,677 - 89,439,412 (+)NCBICelera
Cytogenetic Map3q32NCBI
Lmo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542212,354,845 - 12,362,470 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542212,354,865 - 12,362,026 (+)NCBIChiLan1.0ChiLan1.0
LMO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2936,077,833 - 36,110,953 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11136,082,565 - 36,115,729 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01133,830,370 - 33,863,960 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,712,099 - 33,720,729 (-)NCBIpanpan1.1PanPan1.1panPan2
LMO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1833,481,882 - 33,492,473 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01834,487,785 - 34,497,780 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11834,045,610 - 34,056,746 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01833,639,096 - 33,649,686 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01834,274,467 - 34,285,055 (+)NCBIUU_Cfam_GSD_1.0
Lmo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,982,272 - 30,992,326 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365334,107,067 - 4,117,222 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365334,107,073 - 4,117,121 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl227,044,763 - 27,055,453 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1227,033,924 - 27,055,457 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2229,401,270 - 29,422,801 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1131,382,437 - 31,416,256 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl131,404,872 - 31,416,883 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038128,481,321 - 128,514,918 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000013508   ⟹   ENSHGLP00000013368
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476713,245,984 - 13,257,440 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000013509   ⟹   ENSHGLP00000013369
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476713,246,479 - 13,257,440 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000013510   ⟹   ENSHGLP00000013370
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476713,246,548 - 13,257,322 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000013511   ⟹   ENSHGLP00000013371
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476713,246,671 - 13,256,572 (+)Ensembl
RefSeq Acc Id: XM_004852065   ⟹   XP_004852122
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476713,245,991 - 13,257,322 (+)NCBI
RefSeq Acc Id: XM_004852066   ⟹   XP_004852123
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476713,246,563 - 13,257,322 (+)NCBI
RefSeq Acc Id: XM_021264378   ⟹   XP_021120037
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476713,245,783 - 13,257,322 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004852122 (Get FASTA)   NCBI Sequence Viewer  
  XP_004852123 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120037 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB11337 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013368
  ENSHGLP00000013370
Reference Protein Sequences
RefSeq Acc Id: XP_021120037   ⟸   XM_021264378
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004852122   ⟸   XM_004852065
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004852123   ⟸   XM_004852066
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000013368   ⟸   ENSHGLT00000013508
RefSeq Acc Id: ENSHGLP00000013371   ⟸   ENSHGLT00000013511
RefSeq Acc Id: ENSHGLP00000013370   ⟸   ENSHGLT00000013510
RefSeq Acc Id: ENSHGLP00000013369   ⟸   ENSHGLT00000013509


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009556 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000013508 ENTREZGENE
  ENSHGLT00000013510 ENTREZGENE
NCBI Gene Lmo2 ENTREZGENE