Cep78 (centrosomal protein 78) - Rat Genome Database

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Gene: Cep78 (centrosomal protein 78) Heterocephalus glaber
Analyze
Symbol: Cep78
Name: centrosomal protein 78
RGD ID: 18911312
Description: INVOLVED IN cilium organization (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); Cone-Rod Dystrophy and Hearing Loss (ortholog); Cone-Rod Dystrophy and Hearing Loss 1 (ortholog); FOUND IN ciliary basal body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centrosomal protein of 78 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248115,658,322 - 5,698,770 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248115,658,299 - 5,698,802 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cep78
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248115,658,322 - 5,698,770 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248115,658,299 - 5,698,802 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CEP78
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38978,236,075 - 78,279,690 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl978,236,062 - 78,279,690 (+)EnsemblGRCh38hg38GRCh38
GRCh37980,850,991 - 80,894,606 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36980,040,811 - 80,071,803 (+)NCBINCBI36Build 36hg18NCBI36
Celera951,428,255 - 51,459,253 (+)NCBICelera
Cytogenetic Map9q21.2NCBI
HuRef950,682,081 - 50,713,077 (+)NCBIHuRef
CHM1_1980,998,372 - 81,029,632 (+)NCBICHM1_1
T2T-CHM13v2.0990,393,203 - 90,436,832 (+)NCBIT2T-CHM13v2.0
Cep78
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391915,933,134 - 15,962,396 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1915,933,137 - 15,962,353 (-)EnsemblGRCm39 Ensembl
GRCm381915,955,768 - 15,985,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1915,955,773 - 15,984,989 (-)EnsemblGRCm38mm10GRCm38
MGSCv371916,030,263 - 16,059,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361916,022,792 - 16,052,008 (-)NCBIMGSCv36mm8
Celera1916,608,800 - 16,638,017 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map1910.89NCBI
Cep78
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,674,193 - 222,702,124 (-)NCBIGRCr8
mRatBN7.21213,246,183 - 213,275,275 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1213,246,187 - 213,275,181 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1221,582,042 - 221,607,150 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,511,246 - 228,539,013 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,336,597 - 221,361,705 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01233,185,815 - 233,214,876 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1233,186,989 - 233,214,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,302,158 - 240,331,192 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,319,422 - 219,348,011 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11219,483,445 - 219,511,822 (-)NCBI
Celera1210,585,512 - 210,613,153 (-)NCBICelera
Cytogenetic Map1q43NCBI
Cep78
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555121,180,722 - 1,222,186 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555121,184,521 - 1,222,143 (-)NCBIChiLan1.0ChiLan1.0
CEP78
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21177,395,046 - 77,437,710 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1977,394,248 - 77,443,652 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0946,576,161 - 46,612,342 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1977,086,877 - 77,122,288 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl977,086,877 - 77,121,459 (+)Ensemblpanpan1.1panPan2
CEP78
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1180,437,902 - 80,469,383 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl180,438,695 - 80,469,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha180,900,240 - 80,933,293 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0180,848,847 - 80,881,913 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl180,849,188 - 80,881,889 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1180,634,652 - 80,667,700 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0180,355,900 - 80,388,948 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0181,086,218 - 81,119,486 (-)NCBIUU_Cfam_GSD_1.0
Cep78
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947127,625,045 - 127,648,068 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650313,524,981 - 13,537,449 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP78
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1231,081,196 - 231,115,940 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11231,081,157 - 231,113,065 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21257,749,180 - 257,780,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP78
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11289,158,537 - 89,210,244 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1289,158,676 - 89,188,645 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603877,499,920 - 77,550,564 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000003496   ⟹   ENSHGLP00000003441
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248115,658,322 - 5,698,770 (+)Ensembl
RefSeq Acc Id: XM_004862541   ⟹   XP_004862598
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248115,658,299 - 5,698,802 (+)NCBI
RefSeq Acc Id: XM_004862543   ⟹   XP_004862600
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248115,658,524 - 5,698,743 (+)NCBI
RefSeq Acc Id: XM_021242735   ⟹   XP_021098394
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248115,658,299 - 5,698,802 (+)NCBI
RefSeq Acc Id: XM_021242736   ⟹   XP_021098395
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248115,658,299 - 5,698,802 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004862598 (Get FASTA)   NCBI Sequence Viewer  
  XP_004862600 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098394 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098395 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003441
GenBank Protein JAN97040 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004862598   ⟸   XM_004862541
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J1E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098394   ⟸   XM_021242735
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J1E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098395   ⟸   XM_021242736
- Peptide Label: isoform X4
- UniProtKB: A0A0P6J1E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004862600   ⟸   XM_004862543
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J1E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000003441   ⟸   ENSHGLT00000003496


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002547 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000003496 ENTREZGENE
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cep78 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Cep78 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 78 KDA UniProtKB/TrEMBL
  CENTROSOMAL PROTEIN OF 78 KDA UniProtKB/TrEMBL
Pfam LRR_6 UniProtKB/TrEMBL
PRINTS CENTROSOME78 UniProtKB/TrEMBL
SMART LRR_RI UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0A0P6J1E3 ENTREZGENE, UniProtKB/TrEMBL