Zcchc8 (zinc finger CCHC-type containing 8) - Rat Genome Database

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Gene: Zcchc8 (zinc finger CCHC-type containing 8) Heterocephalus glaber
Analyze
Symbol: Zcchc8
Name: zinc finger CCHC-type containing 8
RGD ID: 18910886
Description: ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN mRNA 3'-end processing (ortholog); RNA processing (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); aplastic anemia (ortholog); dyskeratosis congenita (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear body (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCHC domain-containing protein 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474722,615,310 - 22,639,076 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zcchc8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474722,615,310 - 22,639,076 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZCCHC8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,471,600 - 122,500,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,471,600 - 122,500,932 (-)EnsemblGRCh38hg38GRCh38
GRCh3712122,956,147 - 122,985,479 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,523,388 - 121,551,471 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412121,482,314 - 121,510,398NCBI
Celera12122,549,115 - 122,577,860 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12119,917,061 - 119,946,428 (-)NCBIHuRef
CHM1_112122,924,443 - 122,953,852 (-)NCBICHM1_1
T2T-CHM13v2.012122,467,426 - 122,496,741 (-)NCBIT2T-CHM13v2.0
Zcchc8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,836,365 - 123,859,107 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5123,836,357 - 123,859,163 (-)EnsemblGRCm39 Ensembl
GRCm385123,698,302 - 123,721,044 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,698,294 - 123,721,100 (-)EnsemblGRCm38mm10GRCm38
MGSCv375124,148,311 - 124,171,053 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365123,960,412 - 123,981,558 (-)NCBIMGSCv36mm8
Celera5120,774,733 - 120,797,566 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.14NCBI
Zcchc8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,530,037 - 38,553,595 (+)NCBIGRCr8
mRatBN7.21232,869,170 - 32,892,707 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,869,310 - 32,891,325 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1234,047,842 - 34,071,162 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,659,193 - 34,682,512 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,711,071 - 33,734,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,303,665 - 38,327,174 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,303,624 - 38,326,502 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,177,903 - 40,201,629 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,007,470 - 34,029,866 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,870,878 - 33,893,253 (+)NCBI
Celera1234,554,787 - 34,576,874 (+)NCBICelera
Cytogenetic Map12q16NCBI
Zcchc8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554826,163,990 - 6,184,967 (+)NCBIChiLan1.0ChiLan1.0
ZCCHC8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210130,565,168 - 130,593,166 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112130,561,544 - 130,589,540 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012120,075,830 - 120,103,820 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112124,297,279 - 124,325,110 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,297,279 - 124,325,110 (-)Ensemblpanpan1.1panPan2
ZCCHC8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,895,873 - 6,927,262 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,895,904 - 6,926,484 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha267,055,718 - 7,087,455 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0267,146,830 - 7,178,682 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,146,852 - 7,178,679 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,077,116 - 7,109,143 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,170,594 - 7,202,146 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0267,125,675 - 7,157,475 (+)NCBIUU_Cfam_GSD_1.0
Zcchc8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,393,740 - 157,420,553 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365582,058,928 - 2,084,639 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365582,058,513 - 2,085,686 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,264,291 - 30,288,658 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11430,264,397 - 30,288,068 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,881,632 - 31,903,948 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111117,810,007 - 117,839,916 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037127,484,349 - 127,514,079 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004843899   ⟹   XP_004843956
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474722,615,310 - 22,639,076 (-)NCBI
RefSeq Acc Id: XM_021257569   ⟹   XP_021113228
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474722,615,310 - 22,638,565 (-)NCBI
RefSeq Acc Id: XM_021257570   ⟹   XP_021113229
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474722,615,310 - 22,633,774 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843956 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113228 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113229 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004843956   ⟸   XM_004843899
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021113228   ⟸   XM_021257569
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021113229   ⟸   XM_021257570
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene Zcchc8 ENTREZGENE