Spag1 (sperm associated antigen 1) - Rat Genome Database

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Gene: Spag1 (sperm associated antigen 1) Heterocephalus glaber
Analyze
Symbol: Spag1
Name: sperm associated antigen 1
RGD ID: 18910219
Description: ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); Cohen syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); protein folding chaperone complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm-associated antigen 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247637,082,692 - 7,140,453 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247637,074,468 - 7,141,388 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Spag1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247637,082,692 - 7,140,453 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247637,074,468 - 7,141,388 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPAG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388100,158,038 - 100,241,904 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8100,157,906 - 100,259,278 (+)EnsemblGRCh38hg38GRCh38
GRCh378101,170,266 - 101,254,132 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368101,239,439 - 101,323,306 (+)NCBINCBI36Build 36hg18NCBI36
Build 348101,239,438 - 101,323,306NCBI
Celera897,355,644 - 97,439,501 (+)NCBICelera
Cytogenetic Map8q22.2NCBI
HuRef896,373,019 - 96,457,131 (+)NCBIHuRef
CHM1_18101,210,561 - 101,294,468 (+)NCBICHM1_1
T2T-CHM13v2.08101,282,818 - 101,366,675 (+)NCBIT2T-CHM13v2.0
Spag1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391536,175,629 - 36,235,767 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1536,178,245 - 36,235,767 (+)EnsemblGRCm39 Ensembl
GRCm381536,176,229 - 36,235,621 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1536,178,099 - 36,235,621 (+)EnsemblGRCm38mm10GRCm38
MGSCv371536,109,285 - 36,164,932 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361536,123,957 - 36,180,199 (+)NCBIMGSCv36mm8
Celera1536,807,290 - 36,863,102 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.46NCBI
Spag1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8769,246,301 - 69,306,483 (+)NCBIGRCr8
mRatBN7.2767,361,474 - 67,421,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl767,361,477 - 67,421,368 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx769,249,912 - 69,309,786 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0771,452,530 - 71,512,410 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0771,320,391 - 71,380,267 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0774,994,379 - 75,054,294 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl774,994,605 - 75,054,293 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0775,143,486 - 75,202,278 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4771,699,341 - 71,759,373 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1771,720,070 - 71,780,102 (+)NCBI
Celera764,442,618 - 64,502,487 (+)NCBICelera
Cytogenetic Map7q22NCBI
Spag1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541715,421,737 - 15,481,797 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541715,417,604 - 15,482,650 (+)NCBIChiLan1.0ChiLan1.0
SPAG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27117,506,122 - 117,590,424 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1893,045,041 - 93,128,518 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0896,798,887 - 96,882,982 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1898,973,277 - 99,055,728 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl898,977,469 - 99,054,849 (+)Ensemblpanpan1.1panPan2
SPAG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1132,065,726 - 2,127,199 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,063,133 - 2,124,525 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0132,218,823 - 2,280,267 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl132,221,885 - 2,279,621 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1132,063,009 - 2,124,472 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0132,175,065 - 2,236,504 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0132,176,064 - 2,237,493 (+)NCBIUU_Cfam_GSD_1.0
Spag1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530335,589,586 - 35,651,659 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647043,016,575 - 43,075,239 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647043,015,688 - 43,078,158 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl436,746,801 - 36,844,512 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1436,746,798 - 36,844,662 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2439,668,767 - 39,757,888 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPAG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1895,008,812 - 95,093,315 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl895,013,250 - 95,092,451 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603945,587,051 - 45,674,006 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006035   ⟹   ENSHGLP00000005961
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247637,082,692 - 7,140,453 (+)Ensembl
RefSeq Acc Id: XM_021262620   ⟹   XP_021118279
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247637,074,468 - 7,141,388 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021118279 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005961
Reference Protein Sequences
RefSeq Acc Id: XP_021118279   ⟸   XM_021262620
RefSeq Acc Id: ENSHGLP00000005961   ⟸   ENSHGLT00000006035


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004354 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006035 ENTREZGENE
NCBI Gene Spag1 ENTREZGENE