Cd248 (CD248 molecule) - Rat Genome Database

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Gene: Cd248 (CD248 molecule) Heterocephalus glaber
Analyze
Symbol: Cd248
Name: CD248 molecule
RGD ID: 18910177
Description: ENCODES a protein that exhibits calcium ion binding (inferred); extracellular matrix binding (inferred); extracellular matrix protein binding (inferred); INVOLVED IN anatomical structure regression (ortholog); endothelial cell apoptotic process (ortholog); fibroblast migration (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: endosialin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,060,961 - 20,063,594 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,060,917 - 20,063,804 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cd248
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,060,961 - 20,063,594 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,060,917 - 20,063,804 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CD248
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,314,494 - 66,317,044 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,314,494 - 66,317,044 (-)EnsemblGRCh38hg38GRCh38
GRCh371166,081,965 - 66,084,515 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,838,534 - 65,841,091 (-)NCBINCBI36Build 36hg18NCBI36
Build 341165,838,533 - 65,841,091NCBI
Celera1163,401,790 - 63,404,347 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1162,406,928 - 62,409,485 (-)NCBIHuRef
CHM1_11165,966,060 - 65,968,617 (-)NCBICHM1_1
T2T-CHM13v2.01166,308,147 - 66,310,697 (-)NCBIT2T-CHM13v2.0
Cd248
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,118,106 - 5,120,668 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,118,106 - 5,120,710 (+)EnsemblGRCm39 Ensembl
GRCm38195,068,078 - 5,070,640 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,068,078 - 5,070,682 (+)EnsemblGRCm38mm10GRCm38
MGSCv37195,068,078 - 5,070,640 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,068,078 - 5,070,640 (+)NCBIMGSCv36mm8
Celera194,937,125 - 4,939,687 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.24NCBI
Cd248
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,803,052 - 211,805,616 (+)NCBIGRCr8
mRatBN7.21202,373,676 - 202,376,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,373,676 - 202,376,240 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,726,769 - 210,729,333 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,819,100 - 217,821,664 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,510,133 - 210,512,697 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,353,308 - 220,355,872 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,446,425 - 220,448,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,362,064 - 220,364,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,377,520 - 227,380,084 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,689,953 - 207,692,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,843,453 - 207,845,954 (+)NCBI
Celera1199,913,568 - 199,916,132 (+)NCBICelera
Cytogenetic Map1q43NCBI
Cd248
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,006,653 - 19,009,322 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,006,618 - 19,009,532 (+)NCBIChiLan1.0ChiLan1.0
CD248
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,548,402 - 67,551,338 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,591,275 - 68,593,869 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,680,049 - 61,682,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,005,449 - 65,008,653 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,005,716 - 65,008,346 (-)Ensemblpanpan1.1panPan2
CD248
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,991,552 - 50,994,185 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,991,585 - 50,994,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,600,288 - 49,602,891 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,030,146 - 52,032,749 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,030,149 - 52,032,467 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,130,257 - 51,132,860 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,704,390 - 50,706,993 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,494,545 - 51,497,148 (+)NCBIUU_Cfam_GSD_1.0
Cd248
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,842,346 - 6,844,679 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365993,284,695 - 3,287,022 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD248
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,070,910 - 6,073,509 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,070,885 - 6,073,518 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,146,915 - 5,149,542 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD248
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,958,583 - 7,961,159 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,958,616 - 7,960,889 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,240,014 - 105,242,577 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017309   ⟹   ENSHGLP00000017137
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476720,060,961 - 20,063,594 (+)Ensembl
RefSeq Acc Id: XM_013074736   ⟹   XP_012930190
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476720,060,917 - 20,063,804 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012930190 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012930190   ⟸   XM_013074736
- UniProtKB: G5BWX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000017137   ⟸   ENSHGLT00000017309


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012270 Ensembl
Gene3D-CATH Laminin UniProtKB/TrEMBL
  Mannose-Binding Protein A, subunit A UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
NCBI Gene Cd248 ENTREZGENE
PANTHER CHONDROLECTIN VARIANT CHODLFDELTAE UniProtKB/TrEMBL
  ENDOSIALIN UniProtKB/TrEMBL
Pfam EGF_CA UniProtKB/TrEMBL
  FXa_inhibition UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
Superfamily-SCOP C-type lectin-like UniProtKB/TrEMBL
  Growth factor receptor domain UniProtKB/TrEMBL
UniProt G5BWX5 ENTREZGENE, UniProtKB/TrEMBL