Ctbp2 (C-terminal binding protein 2) - Rat Genome Database

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Gene: Ctbp2 (C-terminal binding protein 2) Heterocephalus glaber
Analyze
Symbol: Ctbp2
Name: C-terminal binding protein 2
RGD ID: 18910094
Description: ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); nuclear retinoic acid receptor binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of retinoic acid receptor signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neoplasm Invasiveness (ortholog); Neoplastic Cell Transformation (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); photoreceptor ribbon synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-terminal-binding protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473722,003,871 - 22,165,257 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473722,135,046 - 22,166,580 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ctbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473722,003,871 - 22,165,257 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473722,135,046 - 22,166,580 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CTBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810124,984,317 - 125,162,463 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10124,984,317 - 125,161,170 (-)EnsemblGRCh38hg38GRCh38
GRCh3710126,672,886 - 126,849,599 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610126,666,408 - 126,839,614 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410126,667,390 - 126,706,443NCBI
Celera10120,450,227 - 120,623,304 (-)NCBICelera
Cytogenetic Map10q26.13NCBI
HuRef10120,363,415 - 120,486,611 (-)NCBIHuRef
CHM1_110126,958,181 - 127,131,354 (-)NCBICHM1_1
T2T-CHM13v2.010125,865,353 - 126,042,062 (-)NCBIT2T-CHM13v2.0
Ctbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397132,588,727 - 132,726,048 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7132,589,292 - 132,726,083 (-)EnsemblGRCm39 Ensembl
GRCm387132,986,998 - 133,124,009 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7132,987,563 - 133,124,354 (-)EnsemblGRCm38mm10GRCm38
MGSCv377140,178,694 - 140,315,166 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367132,825,913 - 132,961,691 (-)NCBIMGSCv36mm8
Celera7132,792,998 - 132,952,787 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map776.32NCBI
Ctbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,208,536 - 197,348,802 (-)NCBIGRCr8
mRatBN7.21187,782,064 - 187,918,115 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1187,782,682 - 187,920,222 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1196,132,185 - 196,161,990 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01203,309,199 - 203,338,992 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01195,982,314 - 196,012,104 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01205,001,354 - 205,030,565 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1205,001,396 - 205,040,755 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01211,993,864 - 212,023,075 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41192,463,615 - 192,492,935 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11192,613,495 - 192,642,816 (-)NCBI
Celera1185,527,008 - 185,555,539 (-)NCBICelera
Cytogenetic Map1q41NCBI
Ctbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554772,922,334 - 3,082,406 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554772,922,334 - 3,082,088 (-)NCBIChiLan1.0ChiLan1.0
CTBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28136,838,857 - 137,011,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110136,844,222 - 137,016,902 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010121,550,194 - 121,722,828 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110125,814,926 - 125,985,395 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10125,814,926 - 125,901,248 (-)Ensemblpanpan1.1panPan2
CTBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12834,259,912 - 34,415,113 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2834,260,856 - 34,415,696 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2834,321,769 - 34,478,865 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02834,817,289 - 34,974,135 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2834,817,450 - 34,972,963 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12834,374,411 - 34,531,531 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02834,365,420 - 34,522,841 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02834,617,559 - 34,774,970 (-)NCBIUU_Cfam_GSD_1.0
Ctbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721312,300,041 - 12,388,004 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648613,173,301 - 13,261,259 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648613,173,280 - 13,261,257 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14134,329,941 - 134,487,755 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114134,329,312 - 134,488,805 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214145,880,742 - 145,990,152 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19117,635,124 - 117,806,908 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604878,992,159 - 79,163,189 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015302   ⟹   ENSHGLP00000015148
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473722,003,871 - 22,123,426 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000015303   ⟹   ENSHGLP00000015149
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473722,123,280 - 22,165,257 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000015304   ⟹   ENSHGLP00000015150
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473722,135,046 - 22,164,463 (+)Ensembl
RefSeq Acc Id: XM_004839003   ⟹   XP_004839060
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473722,135,046 - 22,166,580 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004839060 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015150
  ENSHGLP00100056064
GenBank Protein JAN99581 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004839060   ⟸   XM_004839003
- UniProtKB: G5C963 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015150   ⟸   ENSHGLT00000015304
RefSeq Acc Id: ENSHGLP00000015148   ⟸   ENSHGLT00000015302
RefSeq Acc Id: ENSHGLP00000015149   ⟸   ENSHGLT00000015303


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010849 Ensembl, ENTREZGENE
  ENSHGLG00100011964 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000015304 ENTREZGENE
  ENSHGLT00100043806 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro CtBP UniProtKB/TrEMBL
  D-isomer_2_OHA_DH_cat_dom UniProtKB/TrEMBL
  D-isomer_DH_CS UniProtKB/TrEMBL
  D-isomer_DH_NAD-bd UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene Ctbp2 ENTREZGENE
PANTHER C-TERMINAL-BINDING PROTEIN UniProtKB/TrEMBL
  C-TERMINAL-BINDING PROTEIN 2 UniProtKB/TrEMBL
Pfam 2-Hacid_dh UniProtKB/TrEMBL
  2-Hacid_dh_C UniProtKB/TrEMBL
PROSITE D_2_HYDROXYACID_DH_3 UniProtKB/TrEMBL
Superfamily-SCOP Formate/glycerate dehydrogenase catalytic domain-like UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A0N8ETL4_HETGA UniProtKB/TrEMBL
  G5C963 ENTREZGENE, UniProtKB/TrEMBL