Pdik1l (PDLIM1 interacting kinase 1 like) - Rat Genome Database

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Gene: Pdik1l (PDLIM1 interacting kinase 1 like) Heterocephalus glaber
Analyze
Symbol: Pdik1l
Name: PDLIM1 interacting kinase 1 like
RGD ID: 18909415
Description: ENCODES a protein that exhibits ATP binding (inferred); protein kinase activity (inferred); protein serine/threonine kinase activity (inferred); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); retinitis pigmentosa 59 (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Serine/threonine-protein kinase PDIK1L
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476410,178,147 - 10,190,167 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476410,177,161 - 10,187,188 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pdik1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476410,178,147 - 10,190,167 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476410,177,161 - 10,187,188 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PDIK1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,111,162 - 26,125,555 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,111,165 - 26,125,555 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,437,653 - 26,452,046 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,310,913 - 26,324,628 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,122,467 - 26,136,177NCBI
Celera124,834,353 - 24,848,731 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef124,691,580 - 24,705,960 (+)NCBIHuRef
CHM1_1126,550,901 - 26,565,251 (+)NCBICHM1_1
T2T-CHM13v2.0125,948,595 - 25,962,987 (+)NCBIT2T-CHM13v2.0
Pdik1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394134,002,313 - 134,015,157 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4134,002,313 - 134,015,206 (-)EnsemblGRCm39 Ensembl
GRCm384134,275,002 - 134,287,846 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,275,002 - 134,287,895 (-)EnsemblGRCm38mm10GRCm38
MGSCv374133,830,917 - 133,843,761 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364133,547,078 - 133,559,908 (-)NCBIMGSCv36mm8
Celera4132,454,885 - 132,467,787 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.53NCBI
Pdik1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85151,778,813 - 151,793,137 (-)NCBIGRCr8
mRatBN7.25146,495,115 - 146,507,363 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5146,495,115 - 146,506,835 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5149,196,638 - 149,208,318 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05150,967,253 - 150,978,973 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05150,952,852 - 150,964,532 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05152,494,963 - 152,507,693 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5152,494,963 - 152,506,683 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05156,253,978 - 156,266,693 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45153,020,501 - 153,032,221 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15153,033,321 - 153,039,579 (-)NCBI
Celera5144,912,828 - 144,924,426 (-)NCBICelera
Cytogenetic Map5q36NCBI
Pdik1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554525,570,022 - 5,577,801 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554525,571,433 - 5,577,801 (+)NCBIChiLan1.0ChiLan1.0
PDIK1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21200,747,132 - 200,760,244 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11199,843,399 - 199,858,325 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0125,372,456 - 25,386,811 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,439,485 - 26,453,040 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,439,485 - 26,453,376 (+)Ensemblpanpan1.1panPan2
PDIK1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,850,177 - 73,862,798 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,853,519 - 73,860,192 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha270,426,455 - 70,439,102 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,412,964 - 74,425,612 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,414,607 - 74,424,970 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,237,222 - 71,249,882 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,243,121 - 72,255,770 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0273,246,868 - 73,259,522 (-)NCBIUU_Cfam_GSD_1.0
Pdik1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505844,804,862 - 44,825,540 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647410,641,399 - 10,650,754 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647410,641,399 - 10,650,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDIK1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl683,543,780 - 83,554,864 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1683,542,734 - 83,561,244 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2677,178,030 - 77,197,208 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PDIK1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120106,643,926 - 106,657,845 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20106,642,170 - 106,656,432 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660339,761,729 - 9,772,969 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015218   ⟹   ENSHGLP00000015064
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476410,178,147 - 10,190,167 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000015219   ⟹   ENSHGLP00000015065
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476410,178,259 - 10,186,710 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000015220   ⟹   ENSHGLP00000015066
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476410,178,772 - 10,190,167 (+)Ensembl
RefSeq Acc Id: XM_004850633   ⟹   XP_004850690
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476410,178,738 - 10,187,188 (+)NCBI
RefSeq Acc Id: XM_004850634   ⟹   XP_004850691
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476410,178,146 - 10,187,188 (+)NCBI
RefSeq Acc Id: XM_004850635   ⟹   XP_004850692
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476410,177,682 - 10,187,188 (+)NCBI
RefSeq Acc Id: XM_004850636   ⟹   XP_004850693
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476410,177,161 - 10,187,188 (+)NCBI
RefSeq Acc Id: XM_021263102   ⟹   XP_021118761
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476410,178,321 - 10,187,188 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004850693   ⟸   XM_004850636
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004850692   ⟸   XM_004850635
- Peptide Label: isoform X3
- UniProtKB: G5AUQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850691   ⟸   XM_004850634
- Peptide Label: isoform X3
- UniProtKB: G5AUQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118761   ⟸   XM_021263102
- Peptide Label: isoform X3
- UniProtKB: G5AUQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850690   ⟸   XM_004850633
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000015064   ⟸   ENSHGLT00000015218
RefSeq Acc Id: ENSHGLP00000015065   ⟸   ENSHGLT00000015219
RefSeq Acc Id: ENSHGLP00000015066   ⟸   ENSHGLT00000015220


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010790 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015218 ENTREZGENE
  ENSHGLT00000015219 ENTREZGENE
  ENSHGLT00000015220 ENTREZGENE
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene Pdik1l ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE PDIK1L UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PIRSF Integrin-linked_kinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt G5AUQ5 ENTREZGENE, UniProtKB/TrEMBL