Tctn1 (tectonic family member 1) - Rat Genome Database

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Gene: Tctn1 (tectonic family member 1) Heterocephalus glaber
Analyze
Symbol: Tctn1
Name: tectonic family member 1
RGD ID: 18908563
Description: INVOLVED IN central nervous system interneuron axonogenesis (ortholog); dorsal/ventral neural tube patterning (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Developmental Disabilities (ortholog); Developmental Disease (ortholog); FOUND IN ciliary transition zone (ortholog); extracellular space (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tectonic-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474721,265,197 - 21,300,149 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474721,259,515 - 21,300,180 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tctn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474721,265,197 - 21,300,149 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474721,259,515 - 21,300,180 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TCTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812110,614,129 - 110,649,430 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12110,614,027 - 110,663,431 (+)EnsemblGRCh38hg38GRCh38
GRCh3712111,051,934 - 111,087,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612109,536,263 - 109,571,318 (+)NCBINCBI36Build 36hg18NCBI36
Celera12110,678,539 - 110,713,763 (+)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12108,069,611 - 108,104,641 (+)NCBIHuRef
CHM1_112111,019,493 - 111,054,597 (+)NCBICHM1_1
T2T-CHM13v2.012110,591,820 - 110,627,124 (+)NCBIT2T-CHM13v2.0
Tctn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395122,377,558 - 122,402,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5122,375,911 - 122,402,523 (-)EnsemblGRCm39 Ensembl
GRCm385122,239,495 - 122,264,489 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,237,848 - 122,264,460 (-)EnsemblGRCm38mm10GRCm38
MGSCv375122,691,524 - 122,714,469 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365122,512,790 - 122,525,036 (-)NCBIMGSCv36mm8
Celera5119,323,913 - 119,346,857 (-)NCBICelera
Cytogenetic Map5FNCBI
Tctn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,970,554 - 40,003,727 (+)NCBIGRCr8
mRatBN7.21234,309,795 - 34,347,190 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,309,897 - 34,342,267 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1235,482,243 - 35,515,370 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,093,478 - 36,126,603 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,145,937 - 35,179,065 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01239,790,948 - 39,828,215 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1239,790,965 - 39,824,064 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01241,671,666 - 41,704,377 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41235,505,936 - 35,538,060 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1235,981,033 - 36,014,248 (+)NCBICelera
Cytogenetic Map12q16NCBI
Tctn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554827,504,532 - 7,528,542 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554827,504,554 - 7,533,605 (+)NCBIChiLan1.0ChiLan1.0
TCTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210118,673,279 - 118,744,321 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112118,669,116 - 118,738,085 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012108,182,496 - 108,232,202 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112111,577,599 - 111,625,933 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12111,577,755 - 111,610,754 (+)Ensemblpanpan1.1panPan2
TCTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,411,429 - 8,444,640 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,407,105 - 8,437,027 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha268,570,117 - 8,607,746 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0268,664,975 - 8,702,825 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl268,665,030 - 8,702,820 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1268,623,531 - 8,661,028 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0268,685,534 - 8,723,166 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0268,638,133 - 8,675,965 (+)NCBIUU_Cfam_GSD_1.0
Tctn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118155,898,214 - 155,926,585 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365583,552,864 - 3,581,368 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365583,552,909 - 3,581,212 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1431,954,000 - 32,010,185 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11431,953,996 - 32,010,202 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21433,898,457 - 33,932,334 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TCTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111105,855,138 - 105,898,764 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11105,855,288 - 105,891,093 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037139,217,745 - 139,261,879 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017942   ⟹   ENSHGLP00000017767
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474721,265,197 - 21,300,149 (-)Ensembl
RefSeq Acc Id: XM_013071787   ⟹   XP_012927241
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474721,262,890 - 21,300,180 (-)NCBI
RefSeq Acc Id: XM_021257492   ⟹   XP_021113151
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474721,265,196 - 21,300,179 (-)NCBI
RefSeq Acc Id: XM_021257493   ⟹   XP_021113152
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474721,265,196 - 21,300,179 (-)NCBI
RefSeq Acc Id: XM_021257494   ⟹   XP_021113153
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474721,259,515 - 21,300,180 (-)NCBI
RefSeq Acc Id: XM_021257495   ⟹   XP_021113154
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474721,265,196 - 21,290,379 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012927241 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113151 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113152 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113153 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113154 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017767
GenBank Protein JAN98718 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021113153   ⟸   XM_021257494
- Peptide Label: isoform X3
- UniProtKB: G5AWL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927241   ⟸   XM_013071787
- Peptide Label: isoform X4
- UniProtKB: G5AWL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113152   ⟸   XM_021257493
- Peptide Label: isoform X2
- UniProtKB: G5AWL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113151   ⟸   XM_021257492
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J3E5 (UniProtKB/TrEMBL),   G5AWL9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113154   ⟸   XM_021257495
- Peptide Label: isoform X5
RefSeq Acc Id: ENSHGLP00000017767   ⟸   ENSHGLT00000017942


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012709 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017942 ENTREZGENE
InterPro Tectonic UniProtKB/TrEMBL
  Tectonic_dom UniProtKB/TrEMBL
KEGG Report hgl:101714825 UniProtKB/TrEMBL
NCBI Gene Tctn1 ENTREZGENE
PANTHER PTHR14611 UniProtKB/TrEMBL
  TECTONIC-1 UniProtKB/TrEMBL
Pfam DUF1619 UniProtKB/TrEMBL
UniProt A0A0P6J3E5 ENTREZGENE, UniProtKB/TrEMBL
  G5AWL9 ENTREZGENE, UniProtKB/TrEMBL