Clasrp (CLK4 associating serine/arginine rich protein) - Rat Genome Database

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Gene: Clasrp (CLK4 associating serine/arginine rich protein) Heterocephalus glaber
Analyze
Symbol: Clasrp
Name: CLK4 associating serine/arginine rich protein
RGD ID: 18906767
Description: FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CLK4-associating serine/arginine rich protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,830,819 - 1,852,548 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,829,814 - 1,852,644 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Clasrp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249071,830,819 - 1,852,548 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249071,829,814 - 1,852,644 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CLASRP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,039,045 - 45,070,956 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,039,045 - 45,070,956 (+)EnsemblGRCh38hg38GRCh38
GRCh371945,542,303 - 45,574,214 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,234,138 - 50,266,054 (+)NCBINCBI36Build 36hg18NCBI36
Build 341950,234,137 - 50,266,054NCBI
Celera1942,346,597 - 42,378,501 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1941,972,508 - 42,004,439 (+)NCBIHuRef
CHM1_11945,545,619 - 45,577,544 (+)NCBICHM1_1
T2T-CHM13v2.01947,864,144 - 47,896,071 (+)NCBIT2T-CHM13v2.0
Clasrp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39719,314,963 - 19,338,442 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl719,314,960 - 19,338,411 (-)EnsemblGRCm39 Ensembl
GRCm38719,581,038 - 19,604,517 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,581,035 - 19,604,486 (-)EnsemblGRCm38mm10GRCm38
MGSCv37720,166,392 - 20,189,817 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,739,565 - 18,761,765 (-)NCBIMGSCv36mm8
Celera716,986,808 - 17,010,058 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.93NCBI
Clasrp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8188,360,235 - 88,384,343 (-)NCBIGRCr8
mRatBN7.2179,232,260 - 79,256,462 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,232,261 - 79,256,354 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,627,109 - 84,651,167 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0193,178,673 - 93,202,702 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0186,382,212 - 86,406,269 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,491,520 - 80,515,761 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,491,480 - 80,515,694 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,757,541 - 81,790,260 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera173,691,745 - 73,715,876 (-)NCBICelera
Cytogenetic Map1q21NCBI
Clasrp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555552,087,318 - 2,109,416 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555552,086,356 - 2,109,503 (+)NCBIChiLan1.0ChiLan1.0
CLASRP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,199,494 - 51,231,562 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,071,523 - 53,102,966 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,987,712 - 42,019,392 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11950,591,473 - 50,623,238 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1950,591,473 - 50,623,238 (+)Ensemblpanpan1.1panPan2
CLASRP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11110,412,318 - 110,436,537 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1110,412,340 - 110,435,198 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,894,040 - 109,917,790 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,942,717 - 110,966,244 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,942,727 - 110,966,182 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,617,974 - 110,641,488 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,253,142 - 110,276,887 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,121,948 - 111,145,477 (-)NCBIUU_Cfam_GSD_1.0
Clasrp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,249,604 - 17,275,573 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367061,597,935 - 1,622,812 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367061,596,980 - 1,622,916 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLASRP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl651,480,525 - 51,503,883 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1651,480,479 - 51,503,887 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CLASRP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1638,501,597 - 38,530,510 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607318,088,227 - 18,121,169 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027709   ⟹   ENSHGLP00000027466
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249071,830,819 - 1,852,548 (+)Ensembl
RefSeq Acc Id: XM_004873151   ⟹   XP_004873208
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249071,829,814 - 1,852,644 (+)NCBI
RefSeq Acc Id: XM_004873152   ⟹   XP_004873209
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249071,829,815 - 1,852,644 (+)NCBI
RefSeq Acc Id: XM_021250843   ⟹   XP_021106502
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249071,829,903 - 1,852,644 (+)NCBI
RefSeq Acc Id: XR_002391751
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249071,829,815 - 1,852,315 (+)NCBI
RefSeq Acc Id: XR_002391752
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249071,829,815 - 1,851,884 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004873208 (Get FASTA)   NCBI Sequence Viewer  
  XP_004873209 (Get FASTA)   NCBI Sequence Viewer  
  XP_021106502 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027466
Reference Protein Sequences
RefSeq Acc Id: XP_004873208   ⟸   XM_004873151
- Peptide Label: isoform X1
- UniProtKB: G5CBM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004873209   ⟸   XM_004873152
- Peptide Label: isoform X2
- UniProtKB: G5CBM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021106502   ⟸   XM_021250843
- Peptide Label: isoform X3
- UniProtKB: G5CBM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000027466   ⟸   ENSHGLT00000027709


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019534 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027709 ENTREZGENE
InterPro SWAP UniProtKB/TrEMBL
  SWAP_N_domain UniProtKB/TrEMBL
NCBI Gene Clasrp ENTREZGENE
PANTHER CLK4-ASSOCIATING SERINE/ARGININE RICH PROTEIN UniProtKB/TrEMBL
  SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT UniProtKB/TrEMBL
Pfam DRY_EERY UniProtKB/TrEMBL
SMART DRY_EERY UniProtKB/TrEMBL
UniProt G5CBM0 ENTREZGENE, UniProtKB/TrEMBL