Taar9 (trace amine associated receptor 9) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Taar9 (trace amine associated receptor 9) Heterocephalus glaber
Analyze
Symbol: Taar9
Name: trace amine associated receptor 9
RGD ID: 18906257
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trace amine-associated receptor 9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247536,575,392 - 6,576,327 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247536,575,392 - 6,576,460 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Taar9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247536,575,392 - 6,576,327 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247536,575,392 - 6,576,460 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TAAR9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386132,538,277 - 132,539,336 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6132,538,277 - 132,539,336 (+)EnsemblGRCh38hg38GRCh38
GRCh376132,859,416 - 132,860,475 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366132,901,120 - 132,902,168 (+)NCBINCBI36Build 36hg18NCBI36
Build 346132,901,119 - 132,902,168NCBI
Celera6133,606,264 - 133,607,312 (+)NCBICelera
Cytogenetic Map6q23.2NCBI
HuRef6130,434,345 - 130,435,393 (+)NCBIHuRef
CHM1_16133,123,100 - 133,124,148 (+)NCBICHM1_1
T2T-CHM13v2.06133,733,231 - 133,734,290 (+)NCBIT2T-CHM13v2.0
Taar9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391023,984,386 - 23,985,432 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1023,984,386 - 23,985,432 (-)EnsemblGRCm39 Ensembl
GRCm381024,108,488 - 24,109,534 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1024,108,488 - 24,109,534 (-)EnsemblGRCm38mm10GRCm38
MGSCv371023,828,294 - 23,829,340 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361023,797,904 - 23,798,950 (-)NCBIMGSCv36mm8
Celera1025,041,558 - 25,042,604 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1011.44NCBI
Taar9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8123,094,225 - 23,095,241 (+)NCBIGRCr8
mRatBN7.2121,274,972 - 21,275,988 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,274,942 - 21,275,988 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx121,052,075 - 21,053,091 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,052,106 - 27,053,122 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,251,807 - 21,252,823 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,319,353 - 22,320,369 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,319,353 - 22,320,369 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0123,769,619 - 23,800,526 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4121,799,726 - 21,800,742 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1121,802,670 - 21,803,687 (+)NCBI
Celera120,025,685 - 20,026,701 (+)NCBICelera
Cytogenetic Map1p12NCBI
TAAR9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25152,520,647 - 152,521,894 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16150,427,731 - 150,428,978 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06130,314,387 - 130,315,634 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16134,422,548 - 134,423,795 (+)NCBIpanpan1.1PanPan1.1panPan2
Taar9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946120,762,127 - 120,763,175 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936560541,345 - 542,385 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100152013
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,161,407 - 31,162,453 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,161,407 - 31,162,453 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2134,682,065 - 34,683,111 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAAR9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604013,194,207 - 13,195,279 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004921089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01033605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000019075   ⟹   ENSHGLP00000018886
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247536,575,392 - 6,576,327 (+)Ensembl
RefSeq Acc Id: XM_004921089   ⟹   XP_004921146
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247536,575,392 - 6,576,460 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004921146 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004921146   ⟸   XM_004921089
RefSeq Acc Id: ENSHGLP00000018886   ⟸   ENSHGLT00000019075


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013540 Ensembl
NCBI Gene Taar9 ENTREZGENE