Gdpd1 (glycerophosphodiester phosphodiesterase domain containing 1) - Rat Genome Database

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Gene: Gdpd1 (glycerophosphodiester phosphodiesterase domain containing 1) Heterocephalus glaber
Analyze
Symbol: Gdpd1
Name: glycerophosphodiester phosphodiesterase domain containing 1
RGD ID: 18905451
Description: ENCODES a protein that exhibits lysophospholipase activity (inferred); phosphoric diester hydrolase activity (inferred); INVOLVED IN N-acylethanolamine metabolic process (ortholog); phospholipid metabolic process (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); FOUND IN cytoplasm (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Glycerophosphodiester phosphodiesterase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248711,102,537 - 1,151,111 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248711,102,825 - 1,150,990 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gdpd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248711,102,537 - 1,151,111 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248711,102,825 - 1,150,990 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GDPD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381759,220,511 - 59,275,970 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1759,220,467 - 59,275,970 (+)EnsemblGRCh38hg38GRCh38
GRCh371757,297,872 - 57,353,331 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361754,652,616 - 54,706,655 (+)NCBINCBI36Build 36hg18NCBI36
Build 341754,652,615 - 54,706,655NCBI
Celera1753,760,671 - 53,816,151 (+)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1752,657,833 - 52,713,276 (+)NCBIHuRef
CHM1_11757,363,286 - 57,418,764 (+)NCBICHM1_1
T2T-CHM13v2.01760,088,603 - 60,144,069 (+)NCBIT2T-CHM13v2.0
Gdpd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391186,924,620 - 86,964,963 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1186,924,693 - 86,964,888 (-)EnsemblGRCm39 Ensembl
GRCm381187,033,794 - 87,074,137 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,033,867 - 87,074,062 (-)EnsemblGRCm38mm10GRCm38
MGSCv371186,847,296 - 86,887,639 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,850,083 - 86,890,243 (-)NCBIMGSCv36mm8
Celera1196,635,277 - 96,676,242 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.87NCBI
Gdpd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81072,318,716 - 72,381,143 (-)NCBIGRCr8
mRatBN7.21071,840,497 - 71,883,936 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1071,840,497 - 71,883,850 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1076,451,011 - 76,494,382 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01075,955,905 - 75,999,276 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01071,420,435 - 71,463,809 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01074,334,972 - 74,376,332 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,334,975 - 74,376,270 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,724,290 - 75,767,814 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41075,300,459 - 75,345,043 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11075,314,828 - 75,359,436 (-)NCBI
Celera1070,756,694 - 70,800,081 (-)NCBICelera
Cytogenetic Map10q26NCBI
Gdpd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554513,751,804 - 3,799,336 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554513,751,229 - 3,799,651 (-)NCBIChiLan1.0ChiLan1.0
GDPD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21975,386,176 - 75,441,695 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11780,197,613 - 80,251,927 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01753,290,496 - 53,345,584 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11758,138,432 - 58,191,995 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1758,138,432 - 58,191,986 (+)Ensemblpanpan1.1panPan2
GDPD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1933,773,365 - 33,827,131 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl933,773,411 - 33,826,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha933,006,339 - 33,060,078 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0934,578,122 - 34,631,947 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl934,577,500 - 34,631,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1933,363,858 - 33,417,560 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0933,652,876 - 33,706,611 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0933,739,617 - 33,793,383 (+)NCBIUU_Cfam_GSD_1.0
Gdpd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,995,796 - 33,043,389 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364904,031,163 - 4,079,347 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364904,032,412 - 4,079,243 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDPD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1235,481,215 - 35,528,092 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11235,481,194 - 35,527,588 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21236,929,124 - 36,942,323 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GDPD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11634,150,765 - 34,208,507 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1634,151,161 - 34,207,653 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660774,948,271 - 5,007,918 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000007767   ⟹   ENSHGLP00000007681
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248711,102,537 - 1,151,111 (+)Ensembl
RefSeq Acc Id: XM_004870353   ⟹   XP_004870410
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248711,102,825 - 1,150,990 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004870410 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB17753 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007681
GenBank Protein JAO02249 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004870410   ⟸   XM_004870353
- UniProtKB: G5C892 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000007681   ⟸   ENSHGLT00000007767


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005571 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007767 ENTREZGENE
Gene3D-CATH 3.20.20.190 UniProtKB/TrEMBL
InterPro GP_PDE_dom UniProtKB/TrEMBL
  PLC-like_Pdiesterase_TIM-brl UniProtKB/TrEMBL
KEGG Report hgl:101718687 UniProtKB/TrEMBL
NCBI Gene Gdpd1 ENTREZGENE
PANTHER LYSOPHOSPHOLIPASE D GDPD1 UniProtKB/TrEMBL
  PHOSPHATIDYLGLYCEROL PHOSPHOLIPASE C UniProtKB/TrEMBL
Pfam GDPD UniProtKB/TrEMBL
PROSITE GP_PDE UniProtKB/TrEMBL
Superfamily-SCOP SSF51695 UniProtKB/TrEMBL
UniProt G5C892 ENTREZGENE, UniProtKB/TrEMBL