Nip7 (nucleolar pre-rRNA processing protein NIP7) - Rat Genome Database

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Gene: Nip7 (nucleolar pre-rRNA processing protein NIP7) Heterocephalus glaber
Analyze
Symbol: Nip7
Name: nucleolar pre-rRNA processing protein NIP7
RGD ID: 18904996
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN ribosomal large subunit biogenesis (inferred); ribosome assembly (inferred); ribosome biogenesis (inferred); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosome subunit biogenesis protein NIP7 homolog; 60S ribosome subunit biogenesis protein NIP7-like protein; NIP7, nucleolar pre-rRNA processing protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474617,028,639 - 17,034,391 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474617,021,139 - 17,034,443 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nip7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474617,028,639 - 17,034,391 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474617,021,139 - 17,034,443 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NIP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381669,339,772 - 69,343,106 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1669,337,996 - 69,343,106 (+)EnsemblGRCh38hg38GRCh38
GRCh371669,373,675 - 69,377,009 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,931,047 - 67,934,510 (+)NCBINCBI36Build 36hg18NCBI36
Build 341667,931,091 - 67,934,496NCBI
Celera1653,888,086 - 53,891,549 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1655,251,189 - 55,254,788 (+)NCBIHuRef
CHM1_11670,781,431 - 70,785,030 (+)NCBICHM1_1
T2T-CHM13v2.01675,141,466 - 75,144,800 (+)NCBIT2T-CHM13v2.0
Nip7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,783,509 - 107,787,563 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,783,509 - 107,787,563 (+)EnsemblGRCm39 Ensembl
GRCm388107,056,877 - 107,060,931 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8107,056,877 - 107,060,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv378109,580,777 - 109,584,831 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368109,946,006 - 109,948,374 (+)NCBIMGSCv36mm8
Celera8111,283,431 - 111,287,692 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.57NCBI
Nip7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,872,306 - 51,874,448 (+)NCBIGRCr8
mRatBN7.21934,962,557 - 34,964,700 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,962,557 - 34,964,711 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1941,778,036 - 41,780,178 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01942,431,383 - 42,433,525 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,730,401 - 44,732,528 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01939,257,586 - 39,259,728 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1939,257,586 - 39,259,728 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01950,121,494 - 50,123,636 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,915,152 - 36,917,294 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11936,920,032 - 36,922,175 (+)NCBI
Celera1934,386,191 - 34,388,333 (+)NCBICelera
Cytogenetic Map19q12NCBI
Nip7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554847,354,897 - 7,356,939 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554847,354,897 - 7,356,939 (-)NCBIChiLan1.0ChiLan1.0
NIP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21878,884,002 - 78,887,723 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11684,795,837 - 84,799,199 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01649,714,014 - 49,717,432 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11669,099,907 - 69,103,578 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1669,099,907 - 69,103,578 (+)Ensemblpanpan1.1panPan2
NIP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1580,287,699 - 80,316,350 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl580,313,741 - 80,316,275 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha580,304,051 - 80,306,585 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0580,721,620 - 80,750,261 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl580,747,612 - 80,750,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1580,574,801 - 80,577,350 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0580,257,644 - 80,260,180 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0580,897,229 - 80,899,763 (-)NCBIUU_Cfam_GSD_1.0
Nip7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,123,926 - 40,132,822 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647519,456,269 - 19,459,805 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647519,456,300 - 19,465,139 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl617,635,548 - 17,645,422 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1617,642,092 - 17,645,404 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2616,588,814 - 16,592,128 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NIP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1558,064,294 - 58,067,645 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl558,064,954 - 58,067,340 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604720,794,368 - 20,797,641 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000024745   ⟹   ENSHGLP00000024524
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474617,028,639 - 17,034,391 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000024746   ⟹   ENSHGLP00000024525
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474617,032,771 - 17,034,313 (-)Ensembl
RefSeq Acc Id: XM_004842947   ⟹   XP_004843004
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474617,031,459 - 17,034,443 (-)NCBI
RefSeq Acc Id: XM_004842948   ⟹   XP_004843005
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474617,021,139 - 17,034,443 (-)NCBI
RefSeq Acc Id: XM_021256784   ⟹   XP_021112443
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474617,024,414 - 17,034,443 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843004 (Get FASTA)   NCBI Sequence Viewer  
  XP_004843005 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112443 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97405 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024524
  ENSHGLP00000036407
  ENSHGLP00100007135
GenBank Protein JAN98561 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004843005   ⟸   XM_004842948
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021112443   ⟸   XM_021256784
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004843004   ⟸   XM_004842947
- Peptide Label: isoform X1
- UniProtKB: G5AK45 (UniProtKB/TrEMBL),   G5B3C8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000024524   ⟸   ENSHGLT00000024745
RefSeq Acc Id: ENSHGLP00000024525   ⟸   ENSHGLT00000024746


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017478 Ensembl, ENTREZGENE
  ENSHGLG00000050114 UniProtKB/TrEMBL
  ENSHGLG00100005353 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000024745 ENTREZGENE
  ENSHGLT00000074700 UniProtKB/TrEMBL
  ENSHGLT00100007228 UniProtKB/TrEMBL
Gene3D-CATH 2.30.130.10 UniProtKB/TrEMBL
  3.10.450.220 UniProtKB/TrEMBL
InterPro PUA UniProtKB/TrEMBL
  PUA-like_sf UniProtKB/TrEMBL
  PUA_sf UniProtKB/TrEMBL
  Ribosomal_synth_fac_NIP7 UniProtKB/TrEMBL
  UPF0113_N UniProtKB/TrEMBL
  UPF0113_PUA UniProtKB/TrEMBL
KEGG Report hgl:101714818 UniProtKB/TrEMBL
NCBI Gene Nip7 ENTREZGENE
PANTHER 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG UniProtKB/TrEMBL
  CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 UniProtKB/TrEMBL
Pfam UPF0113 UniProtKB/TrEMBL
  UPF0113_N UniProtKB/TrEMBL
PIRSF Rbsml_synth_fac_NIP7 UniProtKB/TrEMBL
PROSITE PUA UniProtKB/TrEMBL
SMART PUA UniProtKB/TrEMBL
Superfamily-SCOP Pre-PUA domain UniProtKB/TrEMBL
  SSF88697 UniProtKB/TrEMBL
UniProt G5AK45 ENTREZGENE, UniProtKB/TrEMBL
  G5B3C8 ENTREZGENE, UniProtKB/TrEMBL