Zkscan5 (zinc finger with KRAB and SCAN domains 5) - Rat Genome Database

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Gene: Zkscan5 (zinc finger with KRAB and SCAN domains 5) Heterocephalus glaber
Analyze
Symbol: Zkscan5
Name: zinc finger with KRAB and SCAN domains 5
RGD ID: 18904313
Description: ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein with KRAB and SCAN domains 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,945,659 - 32,970,323 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474032,944,867 - 32,970,991 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Zkscan5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,945,659 - 32,970,323 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474032,944,867 - 32,970,991 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZKSCAN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,504,662 - 99,534,700 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,504,662 - 99,534,700 (+)EnsemblGRCh38hg38GRCh38
GRCh37799,102,285 - 99,132,323 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,940,209 - 98,969,381 (+)NCBINCBI36Build 36hg18NCBI36
Build 34798,746,946 - 98,776,095NCBI
Celera793,836,480 - 93,865,674 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,738,975 - 93,768,214 (+)NCBIHuRef
CHM1_1799,032,363 - 99,061,544 (+)NCBICHM1_1
T2T-CHM13v2.07100,739,627 - 100,773,622 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,462,045 - 98,491,238 (+)NCBI
Zkscan5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395145,141,349 - 145,158,562 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5145,141,372 - 145,158,560 (+)EnsemblGRCm39 Ensembl
GRCm385145,204,559 - 145,221,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5145,204,562 - 145,221,750 (+)EnsemblGRCm38mm10GRCm38
MGSCv375145,965,428 - 145,982,619 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365145,458,771 - 145,475,277 (+)NCBIMGSCv36mm8
Celera5142,196,607 - 142,213,789 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map585.14NCBI
Zkscan5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,498,342 - 14,519,537 (-)NCBIGRCr8
mRatBN7.2129,384,561 - 9,405,763 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,384,571 - 9,405,881 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,190,262 - 10,211,426 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,813,465 - 10,834,630 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,836,889 - 9,858,054 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,154,807 - 11,176,002 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,154,794 - 11,176,106 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,224,021 - 13,245,216 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,697,741 - 9,718,773 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,728,288 - 9,748,150 (-)NCBI
Celera1211,189,559 - 11,210,703 (-)NCBICelera
Cytogenetic Map12p11NCBI
Zkscan5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546015,173,718 - 15,196,207 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546015,173,397 - 15,196,590 (+)NCBIChiLan1.0ChiLan1.0
ZKSCAN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,360,729 - 117,395,215 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17165,625,379 - 165,659,673 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0791,476,962 - 91,507,469 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17104,979,714 - 105,009,521 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7104,979,816 - 105,009,236 (+)Ensemblpanpan1.1panPan2
ZKSCAN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1610,010,083 - 10,031,482 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl610,011,321 - 10,031,624 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,636,650 - 11,657,369 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0610,010,757 - 10,031,478 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl610,008,764 - 10,031,429 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,874,068 - 9,894,747 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,858,964 - 9,879,736 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0610,093,349 - 10,114,058 (-)NCBIUU_Cfam_GSD_1.0
Zkscan5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344138,120,730 - 138,139,773 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367501,805,484 - 1,824,743 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367501,805,534 - 1,825,582 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZKSCAN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl36,442,391 - 6,466,430 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.136,442,315 - 6,464,718 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.236,589,045 - 6,611,406 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZKSCAN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,630,936 - 13,662,654 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2813,630,174 - 13,660,822 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660702,642,439 - 2,674,879 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012969   ⟹   ENSHGLP00000012832
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474032,945,659 - 32,970,323 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000012970   ⟹   ENSHGLP00000012833
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474032,945,659 - 32,970,323 (+)Ensembl
RefSeq Acc Id: XM_004840521   ⟹   XP_004840578
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,944,867 - 32,970,991 (+)NCBI
RefSeq Acc Id: XM_004840522   ⟹   XP_004840579
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,944,867 - 32,970,991 (+)NCBI
RefSeq Acc Id: XM_013070641   ⟹   XP_012926095
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,945,325 - 32,970,991 (+)NCBI
RefSeq Acc Id: XM_021254798   ⟹   XP_021110457
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,945,326 - 32,970,991 (+)NCBI
RefSeq Acc Id: XM_021254799   ⟹   XP_021110458
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,945,325 - 32,970,991 (+)NCBI
RefSeq Acc Id: XM_021254800   ⟹   XP_021110459
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,953,198 - 32,970,991 (+)NCBI
RefSeq Acc Id: XM_021254801   ⟹   XP_021110460
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,959,000 - 32,970,991 (+)NCBI
RefSeq Acc Id: XM_021254803   ⟹   XP_021110462
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,945,967 - 32,970,991 (+)NCBI
RefSeq Acc Id: XM_021254804   ⟹   XP_021110463
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,945,320 - 32,969,433 (+)NCBI
RefSeq Acc Id: XM_021254805   ⟹   XP_021110464
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474032,945,319 - 32,969,433 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004840579   ⟸   XM_004840522
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004840578   ⟸   XM_004840521
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021110464   ⟸   XM_021254805
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021110463   ⟸   XM_021254804
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021110458   ⟸   XM_021254799
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012926095   ⟸   XM_013070641
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021110457   ⟸   XM_021254798
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021110462   ⟸   XM_021254803
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021110459   ⟸   XM_021254800
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021110460   ⟸   XM_021254801
- Peptide Label: isoform X5
RefSeq Acc Id: ENSHGLP00000012832   ⟸   ENSHGLT00000012969
RefSeq Acc Id: ENSHGLP00000012833   ⟸   ENSHGLT00000012970


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009175 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012969 ENTREZGENE
  ENSHGLT00000012970 ENTREZGENE
NCBI Gene Zkscan5 ENTREZGENE