Apof (apolipoprotein F) - Rat Genome Database

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Gene: Apof (apolipoprotein F) Heterocephalus glaber
Analyze
Symbol: Apof
Name: apolipoprotein F
RGD ID: 18904005
Description: INVOLVED IN cholesterol efflux (ortholog); cholesterol metabolic process (ortholog); triglyceride metabolic process (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480211,640,942 - 11,645,030 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Apof
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480211,640,942 - 11,645,030 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
APOF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,360,568 - 56,362,857 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,360,568 - 56,362,857 (-)EnsemblGRCh38hg38GRCh38
GRCh371256,754,352 - 56,756,641 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,040,622 - 55,042,850 (-)NCBINCBI36Build 36hg18NCBI36
Build 341255,040,621 - 55,042,850NCBI
Celera1256,407,715 - 56,409,943 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1253,793,395 - 53,795,623 (-)NCBIHuRef
CHM1_11256,721,725 - 56,723,953 (-)NCBICHM1_1
T2T-CHM13v2.01256,328,255 - 56,330,544 (-)NCBIT2T-CHM13v2.0
Apof
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,104,568 - 128,107,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,103,866 - 128,106,022 (+)EnsemblGRCm39 Ensembl
GRCm3810128,268,699 - 128,271,250 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,267,997 - 128,270,153 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,705,053 - 127,707,207 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,670,946 - 127,673,100 (+)NCBIMGSCv36mm8
Celera10130,653,807 - 130,655,961 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.5NCBI
Apof
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,285,222 - 1,286,659 (+)NCBIGRCr8
mRatBN7.27700,688 - 702,130 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7700,762 - 701,946 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,456,982 - 3,458,436 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,332,963 - 5,334,417 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,635,788 - 5,637,242 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,689,501 - 2,690,938 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,689,501 - 2,690,936 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,668,375 - 2,669,812 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,562,515 - 1,563,953 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7576,977 - 578,414 (+)NCBICelera
Cytogenetic Map7q11NCBI
Apof
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554583,973,734 - 3,978,312 (-)NCBIChiLan1.0ChiLan1.0
APOF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,969,704 - 37,971,215 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,966,470 - 37,967,981 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,552,589 - 32,554,943 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,806,089 - 32,808,022 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,806,130 - 32,807,641 (+)Ensemblpanpan1.1panPan2
APOF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110661,400 - 666,125 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10661,875 - 662,927 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10724,984 - 729,288 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010670,590 - 674,895 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10670,708 - 671,760 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110647,826 - 652,131 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010890,982 - 895,287 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,014,707 - 1,019,012 (-)NCBIUU_Cfam_GSD_1.0
LOC101958515
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,104,056 - 58,105,719 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936646764,689 - 766,265 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,759,475 - 21,760,815 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,759,670 - 21,760,753 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,304,877 - 23,306,515 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APOF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,316,413 - 52,318,956 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,316,800 - 52,318,659 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,666,840 - 193,669,111 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013078248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01071440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013078248   ⟹   XP_012933702
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480211,640,942 - 11,645,030 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012933702 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011190
  ENSHGLP00000030012
  ENSHGLP00000035043
  ENSHGLP00000056780
  ENSHGLP00100026539
  ENSHGLP00100045217
  ENSHGLP00100053963
Reference Protein Sequences
RefSeq Acc Id: XP_012933702   ⟸   XM_013078248
- UniProtKB: G5BB73 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008028 UniProtKB/TrEMBL
  ENSHGLG00100019463 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000011315 UniProtKB/TrEMBL
  ENSHGLT00000054028 UniProtKB/TrEMBL
  ENSHGLT00000062322 UniProtKB/TrEMBL
  ENSHGLT00000089599 UniProtKB/TrEMBL
  ENSHGLT00100026808 UniProtKB/TrEMBL
  ENSHGLT00100049052 UniProtKB/TrEMBL
  ENSHGLT00100089396 UniProtKB/TrEMBL
InterPro APOF UniProtKB/TrEMBL
NCBI Gene Apof ENTREZGENE
PANTHER APOLIPOPROTEIN F UniProtKB/TrEMBL
  APOLIPOPROTEIN F UniProtKB/TrEMBL
Pfam Apolipo_F UniProtKB/TrEMBL
UniProt G5BB73 ENTREZGENE, UniProtKB/TrEMBL