Hes3 (hes family bHLH transcription factor 3) - Rat Genome Database

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Gene: Hes3 (hes family bHLH transcription factor 3) Heterocephalus glaber
Analyze
Symbol: Hes3
Name: hes family bHLH transcription factor 3
RGD ID: 18903332
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN hindbrain morphogenesis (ortholog); in utero embryonic development (ortholog); midbrain development (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hairy and enhancer of split 3; transcription factor HES-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248185,153,717 - 5,161,026 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248185,156,428 - 5,160,858 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hes3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248185,153,717 - 5,161,026 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248185,156,428 - 5,160,858 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HES3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,244,179 - 6,245,578 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,244,179 - 6,245,578 (+)EnsemblGRCh38hg38GRCh38
GRCh3716,304,239 - 6,305,638 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,226,849 - 6,228,225 (+)NCBINCBI36Build 36hg18NCBI36
Celera15,418,756 - 5,420,142 (+)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,452,365 - 5,454,401 (+)NCBIHuRef
CHM1_116,292,896 - 6,294,282 (+)NCBICHM1_1
T2T-CHM13v2.015,769,823 - 5,771,222 (+)NCBIT2T-CHM13v2.0
Hes3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,369,707 - 152,376,133 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,370,429 - 152,376,119 (-)EnsemblGRCm39 Ensembl
GRCm384152,285,250 - 152,291,911 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4152,285,972 - 152,291,662 (-)EnsemblGRCm38mm10GRCm38
MGSCv374151,660,081 - 151,665,771 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364151,129,772 - 151,135,462 (-)NCBIMGSCv36mm8
Celera4154,572,853 - 154,579,001 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.01NCBI
Hes3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85168,076,337 - 168,082,270 (-)NCBIGRCr8
mRatBN7.25162,793,611 - 162,799,578 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,794,367 - 162,796,261 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5165,497,390 - 165,499,284 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05167,318,992 - 167,320,886 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05167,281,192 - 167,283,086 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05169,463,196 - 169,469,795 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,464,989 - 169,467,153 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05173,017,857 - 173,020,507 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,516,965 - 169,518,859 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15169,527,152 - 169,529,047 (-)NCBI
Celera5161,025,648 - 161,027,542 (-)NCBICelera
Cytogenetic Map5q36NCBI
Hes3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554866,272,757 - 6,273,721 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554866,272,757 - 6,273,721 (-)NCBIChiLan1.0ChiLan1.0
HES3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,977,474 - 221,981,958 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,618,837 - 220,623,273 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,008,155 - 5,012,868 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,264,032 - 6,268,002 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,265,738 - 6,266,937 (+)Ensemblpanpan1.1panPan2
HES3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,134,351 - 60,136,924 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,135,918 - 60,136,924 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha560,145,732 - 60,146,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0560,351,678 - 60,353,519 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,351,678 - 60,352,684 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,351,013 - 60,352,019 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,217,827 - 60,219,665 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,619,280 - 60,620,286 (+)NCBIUU_Cfam_GSD_1.0
Hes3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,607,847 - 30,613,685 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,096,870 - 1,097,858 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,096,519 - 1,098,175 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HES3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,133,482 - 67,135,292 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1667,134,259 - 67,138,639 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,038,600 - 62,042,601 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HES3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,493,703 - 125,500,577 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605429,600,131 - 29,601,550 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014069   ⟹   ENSHGLP00000013926
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248185,153,717 - 5,161,026 (-)Ensembl
RefSeq Acc Id: XM_004863929   ⟹   XP_004863986
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248185,156,428 - 5,160,858 (-)NCBI
RefSeq Acc Id: XM_021243559   ⟹   XP_021099218
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248185,156,428 - 5,160,853 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004863986 (Get FASTA)   NCBI Sequence Viewer  
  XP_021099218 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013926
Reference Protein Sequences
RefSeq Acc Id: XP_004863986   ⟸   XM_004863929
RefSeq Acc Id: XP_021099218   ⟸   XM_021243559
RefSeq Acc Id: ENSHGLP00000013926   ⟸   ENSHGLT00000014069


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009953 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014069 ENTREZGENE
NCBI Gene Hes3 ENTREZGENE