Abcg1 (ATP binding cassette subfamily G member 1) - Rat Genome Database

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Gene: Abcg1 (ATP binding cassette subfamily G member 1) Heterocephalus glaber
Analyze
Symbol: Abcg1
Name: ATP binding cassette subfamily G member 1
RGD ID: 18903189
Description: ENCODES a protein that exhibits ADP binding (ortholog); cholesterol transfer activity (ortholog); floppase activity (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); cellular response to high density lipoprotein particle stimulus (ortholog); cholesterol metabolic process (ortholog); ASSOCIATED WITH atherosclerosis (ortholog); cataract 9 multiple types (ortholog); Colorectal Neoplasms (ortholog); FOUND IN endosome (ortholog); external side of plasma membrane (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family G member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474528,104,744 - 28,188,704 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474528,137,140 - 28,188,670 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abcg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474528,104,744 - 28,188,704 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474528,137,140 - 28,188,670 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ABCG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382142,199,689 - 42,297,244 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2142,199,689 - 42,297,244 (+)EnsemblGRCh38hg38GRCh38
GRCh372143,619,799 - 43,717,354 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362142,492,868 - 42,590,423 (+)NCBINCBI36Build 36hg18NCBI36
Build 342142,549,262 - 42,590,421NCBI
Celera2128,767,307 - 28,866,320 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2129,038,262 - 29,134,637 (+)NCBIHuRef
CHM1_12143,180,637 - 43,277,563 (+)NCBICHM1_1
T2T-CHM13v2.02140,589,747 - 40,686,722 (+)NCBIT2T-CHM13v2.0
Abcg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391731,276,668 - 31,336,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1731,276,649 - 31,336,962 (+)EnsemblGRCm39 Ensembl
GRCm381731,057,694 - 31,117,984 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1731,057,675 - 31,117,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv371731,194,639 - 31,254,929 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361730,777,799 - 30,842,789 (+)NCBIMGSCv36mm8
Celera1731,974,265 - 32,035,260 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.8NCBI
Abcg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8209,128,056 - 9,184,312 (+)NCBIGRCr8
mRatBN7.2209,126,687 - 9,182,948 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl209,126,687 - 9,182,948 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx209,822,332 - 9,878,177 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0209,183,506 - 9,239,357 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0209,658,037 - 9,713,910 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0209,743,269 - 9,842,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl209,743,269 - 9,840,489 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02011,922,393 - 12,022,892 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4209,390,485 - 9,459,574 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1209,390,711 - 9,459,801 (+)NCBI
Celera2010,652,719 - 10,708,365 (+)NCBICelera
Cytogenetic Map20p12NCBI
Abcg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540739,410,262 - 39,459,383 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540739,410,262 - 39,459,383 (-)NCBIChiLan1.0ChiLan1.0
ABCG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22238,282,534 - 38,360,690 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12133,137,097 - 33,215,326 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02128,534,697 - 28,619,590 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12141,856,585 - 41,941,031 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2141,839,115 - 41,933,050 (+)Ensemblpanpan1.1panPan2
ABCG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13136,574,406 - 36,627,598 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3136,553,380 - 36,620,043 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3135,705,119 - 35,775,022 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03136,070,404 - 36,140,582 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3136,070,329 - 36,137,398 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13135,963,992 - 36,033,708 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03135,943,824 - 36,013,708 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03136,438,763 - 36,508,785 (+)NCBIUU_Cfam_GSD_1.0
Abcg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497135,789,248 - 35,844,939 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365001,620,641 - 1,678,607 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365001,620,763 - 1,678,561 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13205,561,951 - 205,628,425 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113205,561,897 - 205,628,428 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213215,898,408 - 215,965,031 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1286,098,818 - 86,176,101 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl286,099,414 - 86,179,949 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605413,960,459 - 14,143,791 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000013826   ⟹   ENSHGLP00000013685
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474528,104,744 - 28,188,704 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000013827   ⟹   ENSHGLP00000013686
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474528,135,026 - 28,188,704 (-)Ensembl
RefSeq Acc Id: XM_004842445   ⟹   XP_004842502
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474528,137,772 - 28,188,670 (-)NCBI
RefSeq Acc Id: XM_004842446   ⟹   XP_004842503
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474528,137,772 - 28,188,670 (-)NCBI
RefSeq Acc Id: XM_021256334   ⟹   XP_021111993
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474528,137,140 - 28,188,670 (-)NCBI
RefSeq Acc Id: XM_021256335   ⟹   XP_021111994
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474528,137,140 - 28,188,670 (-)NCBI
RefSeq Acc Id: XM_021256336   ⟹   XP_021111995
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474528,137,140 - 28,173,593 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021111994   ⟸   XM_021256335
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021111993   ⟸   XM_021256334
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021111995   ⟸   XM_021256336
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004842503   ⟸   XM_004842446
- Peptide Label: isoform X5
- UniProtKB: G5B2T9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004842502   ⟸   XM_004842445
- Peptide Label: isoform X4
- UniProtKB: A0A0P6J383 (UniProtKB/TrEMBL),   G5B2T9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000013685   ⟸   ENSHGLT00000013826
RefSeq Acc Id: ENSHGLP00000013686   ⟸   ENSHGLT00000013827


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009783 Ensembl, ENTREZGENE
  ENSHGLG00100002376 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013826 ENTREZGENE
  ENSHGLT00000013827 ENTREZGENE
  ENSHGLT00100052518 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC_2_trans UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  ABCG_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Pigment_permease/Abcg UniProtKB/TrEMBL
KEGG Report hgl:101711124 UniProtKB/TrEMBL
NCBI Gene Abcg1 ENTREZGENE
PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 UniProtKB/TrEMBL
  PTHR48041:SF90 UniProtKB/TrEMBL
Pfam ABC2_membrane UniProtKB/TrEMBL
  ABC2_membrane_7 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6J383 ENTREZGENE, UniProtKB/TrEMBL
  G5B2T9 ENTREZGENE, UniProtKB/TrEMBL