Faap100 (FA core complex associated protein 100) - Rat Genome Database

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Gene: Faap100 (FA core complex associated protein 100) Heterocephalus glaber
Analyze
Symbol: Faap100
Name: FA core complex associated protein 100
RGD ID: 18902309
Description: INVOLVED IN interstrand cross-link repair (inferred); FOUND IN chromatin (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fanconi anemia core complex associated protein 100; Fanconi anemia core complex-associated protein 100; Fanconi anemia-associated protein of 100 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,518,821 - 10,528,594 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,518,916 - 10,528,538 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Faap100
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,518,821 - 10,528,594 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,518,916 - 10,528,538 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FAAP100
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,539,891 - 81,553,133 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,539,885 - 81,553,961 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,506,917 - 79,519,379 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,117,387 - 77,130,023 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,151,328 - 76,163,810 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1774,954,601 - 74,967,082 (-)NCBIHuRef
CHM1_11779,593,115 - 79,605,638 (-)NCBICHM1_1
T2T-CHM13v2.01782,457,203 - 82,471,696 (-)NCBIT2T-CHM13v2.0
Faap100
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,260,388 - 120,269,572 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,259,881 - 120,269,590 (-)EnsemblGRCm39 Ensembl
GRCm3811120,369,562 - 120,378,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,369,055 - 120,378,764 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,230,876 - 120,240,060 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,185,657 - 120,194,707 (-)NCBIMGSCv36mm8
Celera11132,104,313 - 132,113,499 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.08NCBI
Faap100
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,140,820 - 106,152,500 (-)NCBIGRCr8
mRatBN7.210105,641,677 - 105,653,809 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,639,414 - 105,653,494 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010109,539,381 - 109,552,434 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,539,548 - 109,551,362 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,135,731 - 109,146,999 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,797,992 - 109,806,963 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110109,810,309 - 109,821,467 (-)NCBI
Celera10104,186,024 - 104,199,095 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Faap100
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,515,998 - 1,527,668 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,515,908 - 1,525,660 (+)NCBIChiLan1.0ChiLan1.0
FAAP100
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,126,715 - 98,142,244 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,027,000 - 103,041,978 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01775,995,994 - 76,008,255 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,697,543 - 81,710,842 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,697,543 - 81,709,438 (-)Ensemblpanpan1.1panPan2
FAAP100
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19607,198 - 615,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9607,135 - 616,159 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha91,210,038 - 1,218,768 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.091,201,468 - 1,210,194 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,201,471 - 1,210,194 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,225,206 - 1,234,899 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,352,016 - 1,360,739 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,431,902 - 1,440,632 (+)NCBIUU_Cfam_GSD_1.0
Faap100
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,208,635 - 1,218,276 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,193,355 - 5,203,324 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,194,502 - 5,203,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAAP100
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,288,378 - 1,297,147 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,288,371 - 1,297,147 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,131,198 - 1,140,201 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAAP100
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,482,904 - 73,498,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607744,864,927 - 44,879,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017462   ⟹   ENSHGLP00000017289
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480110,518,821 - 10,528,594 (-)Ensembl
RefSeq Acc Id: XM_004860930   ⟹   XP_004860987
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480110,518,916 - 10,528,538 (-)NCBI
RefSeq Acc Id: XM_013078218   ⟹   XP_012933672
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480110,518,916 - 10,528,538 (-)NCBI
RefSeq Acc Id: XM_013078219   ⟹   XP_012933673
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480110,518,916 - 10,528,538 (-)NCBI
RefSeq Acc Id: XM_013078220   ⟹   XP_012933674
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480110,518,916 - 10,528,538 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004860987 (Get FASTA)   NCBI Sequence Viewer  
  XP_012933672 (Get FASTA)   NCBI Sequence Viewer  
  XP_012933673 (Get FASTA)   NCBI Sequence Viewer  
  XP_012933674 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017289
GenBank Protein JAO00665 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012933674   ⟸   XM_013078220
- Peptide Label: isoform X4
- UniProtKB: A0A0P6J8U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933672   ⟸   XM_013078218
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J8U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933673   ⟸   XM_013078219
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004860987   ⟸   XM_004860930
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J8U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000017289   ⟸   ENSHGLT00000017462


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012377 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017462 ENTREZGENE
InterPro Faap100 UniProtKB/TrEMBL
NCBI Gene Faap100 ENTREZGENE
PANTHER FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100 UniProtKB/TrEMBL
  FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100 UniProtKB/TrEMBL
Pfam FANCAA UniProtKB/TrEMBL
UniProt A0A0P6J8U6 ENTREZGENE, UniProtKB/TrEMBL