Npm2 (nucleophosmin/nucleoplasmin 2) - Rat Genome Database

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Gene: Npm2 (nucleophosmin/nucleoplasmin 2) Heterocephalus glaber
Analyze
Symbol: Npm2
Name: nucleophosmin/nucleoplasmin 2
RGD ID: 18902134
Description: ENCODES a protein that exhibits chromatin binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN blastocyst development (ortholog); chromatin remodeling (ortholog); oocyte differentiation (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleoplasmin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475817,618,821 - 17,630,737 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475817,619,202 - 17,630,684 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Npm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475817,618,821 - 17,630,737 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475817,619,202 - 17,630,684 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NPM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,024,134 - 22,036,897 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,024,125 - 22,036,897 (+)EnsemblGRCh38hg38GRCh38
GRCh37821,881,645 - 21,894,408 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36821,938,300 - 21,950,354 (+)NCBINCBI36Build 36hg18NCBI36
Build 34821,938,299 - 21,950,353NCBI
Celera820,844,417 - 20,856,471 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,424,910 - 20,436,965 (+)NCBIHuRef
CHM1_1822,084,017 - 22,096,071 (+)NCBICHM1_1
T2T-CHM13v2.0822,298,091 - 22,310,854 (+)NCBIT2T-CHM13v2.0
Npm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,884,736 - 70,896,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,884,742 - 70,896,684 (-)EnsemblGRCm39 Ensembl
GRCm381470,647,296 - 70,661,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,647,302 - 70,659,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv371471,047,109 - 71,052,891 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361469,382,382 - 69,388,164 (-)NCBIMGSCv36mm8
Celera1468,190,707 - 68,196,480 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.42NCBI
Npm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81552,131,973 - 52,145,710 (-)NCBIGRCr8
mRatBN7.21545,722,282 - 45,729,336 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,722,400 - 45,729,726 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,840,342 - 49,847,082 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,951,859 - 50,958,611 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,811,165 - 47,817,917 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01552,337,457 - 52,345,849 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1552,337,528 - 52,344,629 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01556,059,958 - 56,069,203 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41551,049,549 - 51,056,301 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11551,065,328 - 51,072,081 (-)NCBI
Celera1545,400,915 - 45,407,667 (-)NCBICelera
Cytogenetic Map15p11NCBI
Npm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,517,396 - 45,539,274 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540345,517,426 - 45,539,216 (+)NCBIChiLan1.0ChiLan1.0
NPM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2740,525,794 - 40,538,583 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,250,911 - 16,263,720 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,268,873 - 21,281,684 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,208,934 - 18,221,577 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,208,934 - 18,221,577 (+)Ensemblpanpan1.1panPan2
NPM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12535,204,905 - 35,226,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,793,840 - 35,815,160 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02535,415,838 - 35,437,171 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,415,839 - 35,437,249 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,361,044 - 35,382,366 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02535,215,638 - 35,236,946 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,371,138 - 35,392,472 (-)NCBIUU_Cfam_GSD_1.0
Npm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,699,005 - 12,725,948 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365555,844,854 - 5,868,306 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365555,850,024 - 5,868,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NPM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,289,337 - 6,303,748 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,288,422 - 6,303,750 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2146,726,207 - 6,745,688 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NPM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,096,837 - 20,112,421 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,097,479 - 20,105,639 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605222,129,143 - 22,141,744 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021261225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01038683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000008755   ⟹   ENSHGLP00000008662
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475817,618,821 - 17,630,737 (+)Ensembl
RefSeq Acc Id: XM_021261225   ⟹   XP_021116884
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475817,619,202 - 17,630,684 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021116884 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008662
Reference Protein Sequences
RefSeq Acc Id: XP_021116884   ⟸   XM_021261225
RefSeq Acc Id: ENSHGLP00000008662   ⟸   ENSHGLT00000008755


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006243 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008755 ENTREZGENE
NCBI Gene Npm2 ENTREZGENE