Syngr3 (synaptogyrin 3) - Rat Genome Database

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Gene: Syngr3 (synaptogyrin 3) Heterocephalus glaber
Analyze
Symbol: Syngr3
Name: synaptogyrin 3
RGD ID: 18902110
Description: ENCODES a protein that exhibits SH2 domain binding (inferred); INVOLVED IN regulation of neurotransmitter uptake (ortholog); regulation of synaptic vesicle priming (ortholog); substantia nigra development (ortholog); ASSOCIATED WITH epilepsy (ortholog); idiopathic generalized epilepsy (ortholog); short-rib thoracic dysplasia 9 with or without polydactyly (ortholog); FOUND IN neuromuscular junction (ortholog); synaptic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptogyrin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913265,316 - 270,491 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913266,296 - 270,420 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Syngr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913265,316 - 270,491 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913266,296 - 270,420 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SYNGR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,989,970 - 1,994,275 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,989,660 - 1,994,275 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,039,971 - 2,044,276 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,979,969 - 1,984,277 (+)NCBINCBI36Build 36hg18NCBI36
Build 34161,979,968 - 1,984,276NCBI
Celera162,252,147 - 2,256,455 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,965,975 - 1,968,276 (+)NCBIHuRef
CHM1_1162,039,872 - 2,044,202 (+)NCBICHM1_1
T2T-CHM13v2.0162,009,915 - 2,014,220 (+)NCBIT2T-CHM13v2.0
Syngr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,904,066 - 24,908,923 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,904,066 - 24,908,929 (-)EnsemblGRCm39 Ensembl
GRCm381724,685,092 - 24,689,949 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,685,092 - 24,689,955 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,822,037 - 24,826,894 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,412,692 - 24,417,549 (-)NCBIMGSCv36mm8
Celera1725,208,003 - 25,212,868 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.47NCBI
Syngr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,215,088 - 14,219,844 (-)NCBIGRCr8
mRatBN7.21013,710,553 - 13,715,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,704,998 - 13,715,669 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,457,380 - 18,462,138 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,946,233 - 17,950,991 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,445,435 - 13,450,193 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,051,413 - 14,056,169 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,051,415 - 14,056,169 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01013,868,393 - 13,873,388 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,938,377 - 13,943,131 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,938,375 - 13,943,059 (-)NCBI
Celera1013,390,479 - 13,395,233 (-)NCBICelera
Cytogenetic Map10q12NCBI
Syngr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,272,692 - 15,277,765 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,273,597 - 15,277,740 (-)NCBIChiLan1.0ChiLan1.0
SYNGR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,353,140 - 2,357,479 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,134,807 - 6,139,120 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016710,090 - 714,421 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,078,770 - 2,083,100 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,078,645 - 2,083,100 (+)Ensemblpanpan1.1panPan2
SYNGR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,941,933 - 38,944,110 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,181,673 - 40,186,094 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,258,991 - 39,263,413 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,258,989 - 39,263,455 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,935,781 - 38,940,202 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,908,091 - 38,912,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,386,965 - 39,391,391 (-)NCBIUU_Cfam_GSD_1.0
Syngr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,661,355 - 104,665,817 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,043,657 - 2,047,883 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,043,646 - 2,047,897 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNGR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,975,069 - 39,979,217 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,975,067 - 39,981,537 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2342,202,480 - 42,206,646 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYNGR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,886,899 - 1,891,293 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,886,864 - 1,891,368 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,176,621 - 29,181,012 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000002843   ⟹   ENSHGLP00000002789
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624913265,316 - 270,491 (-)Ensembl
RefSeq Acc Id: XM_004873671   ⟹   XP_004873728
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624913266,296 - 270,420 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004873728 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002789
  ENSHGLP00000053512
  ENSHGLP00100038378
GenBank Protein JAN97008 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004873728   ⟸   XM_004873671
- UniProtKB: A0A0P6IZ20 (UniProtKB/TrEMBL),   G5BY52 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000002789   ⟸   ENSHGLT00000002843


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002099 Ensembl, ENTREZGENE
  ENSHGLG00000031929 UniProtKB/TrEMBL
  ENSHGLG00100052073 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000002843 ENTREZGENE
  ENSHGLT00000086931 UniProtKB/TrEMBL
  ENSHGLT00100042206 UniProtKB/TrEMBL
InterPro Marvel UniProtKB/TrEMBL
  Synaptogyrin UniProtKB/TrEMBL
KEGG Report hgl:101720910 UniProtKB/TrEMBL
NCBI Gene Syngr3 ENTREZGENE
PANTHER PTHR10838 UniProtKB/TrEMBL
  SYNAPTOGYRIN-3 UniProtKB/TrEMBL
Pfam MARVEL UniProtKB/TrEMBL
PIRSF Synaptogyrin UniProtKB/TrEMBL
PROSITE MARVEL UniProtKB/TrEMBL
UniProt A0A0P6IZ20 ENTREZGENE, UniProtKB/TrEMBL
  G5BY52 ENTREZGENE, UniProtKB/TrEMBL