Atad5 (ATPase family AAA domain containing 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Atad5 (ATPase family AAA domain containing 5) Heterocephalus glaber
Analyze
Symbol: Atad5
Name: ATPase family AAA domain containing 5
RGD ID: 18901775
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); DNA binding (inferred); INVOLVED IN cell population proliferation (ortholog); DNA damage response (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); ASSOCIATED WITH cerebral palsy (ortholog); Developmental Disabilities (ortholog); Developmental Disease (ortholog); FOUND IN Elg1 RFC-like complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase family AAA domain-containing protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462487597,670 - 151,080 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462487597,048 - 154,420 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atad5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462487597,670 - 151,080 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462487597,048 - 154,420 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATAD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381730,831,966 - 30,895,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1730,831,966 - 30,895,869 (+)EnsemblGRCh38hg38GRCh38
GRCh371729,158,984 - 29,222,887 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361726,183,146 - 26,246,421 (+)NCBINCBI36Build 36hg18NCBI36
Celera1726,081,154 - 26,143,209 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1725,369,472 - 25,433,201 (+)NCBIHuRef
CHM1_11729,221,626 - 29,284,818 (+)NCBICHM1_1
T2T-CHM13v2.01731,777,675 - 31,841,578 (+)NCBIT2T-CHM13v2.0
Atad5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,980,205 - 80,026,623 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1179,980,226 - 80,026,620 (+)EnsemblGRCm39 Ensembl
GRCm381180,089,379 - 80,135,797 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,089,400 - 80,135,794 (+)EnsemblGRCm38mm10GRCm38
MGSCv371179,902,902 - 79,949,293 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361179,905,607 - 79,951,986 (+)NCBIMGSCv36mm8
Celera1189,725,811 - 89,771,927 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.48NCBI
Atad5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81065,568,569 - 65,616,379 (+)NCBIGRCr8
mRatBN7.21065,070,682 - 65,118,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1065,070,689 - 65,117,845 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01067,427,042 - 67,475,825 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1067,427,066 - 67,473,649 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01067,085,846 - 67,133,349 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41068,292,360 - 68,339,430 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1064,035,434 - 64,084,482 (+)NCBICelera
Cytogenetic Map10q25NCBI
Atad5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554816,986,502 - 7,030,742 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554816,986,128 - 7,031,113 (+)NCBIChiLan1.0ChiLan1.0
ATAD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21933,625,142 - 33,689,216 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11735,506,187 - 35,570,941 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01725,944,259 - 26,009,317 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11725,435,787 - 25,496,752 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1725,436,195 - 25,496,242 (-)Ensemblpanpan1.1panPan2
ATAD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,869,778 - 40,917,976 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,870,924 - 40,915,629 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha940,028,840 - 40,076,672 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0941,686,779 - 41,734,509 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl941,687,535 - 41,734,429 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1940,472,303 - 40,519,939 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0940,766,948 - 40,814,795 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0940,841,975 - 40,889,705 (-)NCBIUU_Cfam_GSD_1.0
Atad5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560239,936,253 - 39,999,208 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365382,811,174 - 2,874,113 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365382,815,370 - 2,877,084 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATAD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,874,599 - 42,920,399 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,874,705 - 42,920,438 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,673,268 - 44,692,341 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATAD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11625,536,911 - 25,597,911 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1625,538,131 - 25,597,695 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660754,463,593 - 4,526,524 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014005   ⟹   ENSHGLP00000013864
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462487597,670 - 151,080 (+)Ensembl
RefSeq Acc Id: XM_013067765   ⟹   XP_012923219
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462487597,048 - 124,226 (+)NCBI
RefSeq Acc Id: XM_021248887   ⟹   XP_021104546
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462487597,061 - 154,420 (+)NCBI
RefSeq Acc Id: XM_021248888   ⟹   XP_021104547
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462487597,059 - 154,420 (+)NCBI
RefSeq Acc Id: XM_021248889   ⟹   XP_021104548
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462487597,056 - 140,198 (+)NCBI
RefSeq Acc Id: XM_021248890   ⟹   XP_021104549
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624875123,160 - 154,420 (+)NCBI
Protein Sequences
Protein RefSeqs XP_012923219 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104546 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104547 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104548 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104549 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013864
GenBank Protein JAN98335 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_012923219   ⟸   XM_013067765
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021104548   ⟸   XM_021248889
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021104547   ⟸   XM_021248888
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J6S9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104546   ⟸   XM_021248887
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J6S9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104549   ⟸   XM_021248890
- Peptide Label: isoform X5
RefSeq Acc Id: ENSHGLP00000013864   ⟸   ENSHGLT00000014005


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009908 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014005 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Atad5 ENTREZGENE
PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 5 UniProtKB/TrEMBL
  CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6J6S9 ENTREZGENE, UniProtKB/TrEMBL