Cd34 (CD34 molecule) - Rat Genome Database

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Gene: Cd34 (CD34 molecule) Heterocephalus glaber
Analyze
Symbol: Cd34
Name: CD34 molecule
RGD ID: 18901484
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); sulfate binding (ortholog); INVOLVED IN cell motility (ortholog); cell-cell adhesion (ortholog); endothelial cell proliferation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 7 (ortholog); diabetic retinopathy (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); cell periphery (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hematopoietic progenitor cell antigen CD34
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248073,936,028 - 3,957,249 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248073,936,043 - 3,958,274 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cd34
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248073,936,028 - 3,957,249 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248073,936,043 - 3,958,274 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CD34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381207,880,972 - 207,911,125 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1207,880,972 - 207,911,402 (-)EnsemblGRCh38hg38GRCh38
GRCh371208,054,317 - 208,084,470 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361206,126,506 - 206,151,306 (-)NCBINCBI36Build 36hg18NCBI36
Build 341204,448,278 - 204,472,910NCBI
Celera1181,290,338 - 181,315,139 (-)NCBICelera
Cytogenetic Map1q32.2NCBI
HuRef1178,734,078 - 178,758,883 (-)NCBIHuRef
CHM1_11209,332,232 - 209,357,037 (-)NCBICHM1_1
T2T-CHM13v2.01207,127,718 - 207,157,876 (-)NCBIT2T-CHM13v2.0
Cd34
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,621,239 - 194,643,587 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,621,127 - 194,643,587 (+)EnsemblGRCm39 Ensembl
GRCm381194,938,821 - 194,961,292 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,938,819 - 194,961,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,765,015 - 196,787,486 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,639,632 - 196,662,003 (+)NCBIMGSCv36mm8
Celera1201,838,605 - 201,861,076 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.38NCBI
Cd34
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813109,008,786 - 109,029,317 (+)NCBIGRCr8
mRatBN7.213106,480,313 - 106,500,844 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13106,480,043 - 106,499,832 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13108,997,703 - 109,016,794 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013110,381,536 - 110,400,621 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013107,606,042 - 107,625,155 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013113,691,842 - 113,711,259 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13113,691,932 - 113,711,647 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013118,531,837 - 118,551,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413110,877,594 - 110,896,722 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera13105,904,553 - 105,923,681 (+)NCBICelera
Cytogenetic Map13q27NCBI
Cd34
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540643,117,816 - 43,130,463 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540643,116,688 - 43,130,405 (-)NCBIChiLan1.0ChiLan1.0
CD34
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2141,488,237 - 41,513,064 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1141,454,311 - 41,479,145 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01183,459,028 - 183,489,583 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11188,272,551 - 188,297,384 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1188,272,551 - 188,297,384 (-)Ensemblpanpan1.1panPan2
CD34
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,734,363 - 6,747,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl76,734,363 - 6,748,581 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha76,297,083 - 6,321,394 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.076,422,992 - 6,447,293 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl76,422,992 - 6,447,293 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.176,355,774 - 6,380,048 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.076,458,250 - 6,482,488 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.076,499,295 - 6,523,438 (-)NCBIUU_Cfam_GSD_1.0
Cd34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934467,790,294 - 67,811,581 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365575,030,441 - 5,051,868 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365575,030,788 - 5,051,864 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD34
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9134,913,121 - 134,937,762 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19134,912,793 - 134,937,763 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29148,445,995 - 148,470,638 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD34
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12521,534,969 - 21,559,951 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2521,534,983 - 21,561,215 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605522,145,967 - 22,170,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000005841   ⟹   ENSHGLP00000005768
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248073,936,028 - 3,957,249 (+)Ensembl
RefSeq Acc Id: XM_004862040   ⟹   XP_004862097
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248073,936,043 - 3,958,274 (+)NCBI
RefSeq Acc Id: XM_004862041   ⟹   XP_004862098
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248073,936,043 - 3,957,036 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004862097 (Get FASTA)   NCBI Sequence Viewer  
  XP_004862098 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005768
Reference Protein Sequences
RefSeq Acc Id: XP_004862097   ⟸   XM_004862040
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004862098   ⟸   XM_004862041
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000005768   ⟸   ENSHGLT00000005841


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004217 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005841 ENTREZGENE
NCBI Gene Cd34 ENTREZGENE